Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | FORC16_RS04460 | Genome accession | NZ_CP011775 |
| Coordinates | 946527..946829 (+) | Length | 100 a.a. |
| NCBI ID | WP_013572179.1 | Uniprot ID | A0AAN1PPQ8 |
| Organism | Vibrio vulnificus strain FORC_016 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 941527..951829
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC16_RS04445 (FORC16_0855) | lon | 941541..943892 (+) | 2352 | WP_011078147.1 | endopeptidase La | - |
| FORC16_RS04450 (FORC16_0856) | - | 944086..944358 (+) | 273 | WP_013572181.1 | HU family DNA-binding protein | - |
| FORC16_RS04455 (FORC16_0857) | ppiD | 944535..946394 (+) | 1860 | WP_013572180.1 | peptidylprolyl isomerase | - |
| FORC16_RS04460 (FORC16_0858) | comEA | 946527..946829 (+) | 303 | WP_013572179.1 | ComEA family DNA-binding protein | Machinery gene |
| FORC16_RS04465 (FORC16_0859) | rrtA | 946876..947460 (-) | 585 | WP_060532181.1 | rhombosortase | - |
| FORC16_RS04470 (FORC16_0860) | - | 947440..948048 (+) | 609 | WP_060532179.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| FORC16_RS04475 (FORC16_0861) | - | 948070..949401 (-) | 1332 | WP_060532176.1 | anti-phage deoxyguanosine triphosphatase | - |
| FORC16_RS04480 (FORC16_0862) | yfbR | 949407..949955 (-) | 549 | WP_230826217.1 | 5'-deoxynucleotidase | - |
| FORC16_RS04485 (FORC16_0863) | - | 950072..951286 (-) | 1215 | WP_011080966.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 10900.72 Da Isoelectric Point: 9.6573
>NTDB_id=148615 FORC16_RS04460 WP_013572179.1 946527..946829(+) (comEA) [Vibrio vulnificus strain FORC_016]
MKQVFTLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL
MKQVFTLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL
Nucleotide
Download Length: 303 bp
>NTDB_id=148615 FORC16_RS04460 WP_013572179.1 946527..946829(+) (comEA) [Vibrio vulnificus strain FORC_016]
ATGAAACAGGTATTTACCCTCTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAATATCAACACAGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
ATGAAACAGGTATTTACCCTCTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAATATCAACACAGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
59 |
100 |
0.59 |
| comEA | Vibrio campbellii strain DS40M4 |
54 |
100 |
0.54 |
| comEA | Vibrio cholerae C6706 |
52.041 |
98 |
0.51 |
| comEA | Vibrio cholerae strain A1552 |
52.041 |
98 |
0.51 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
60 |
60 |
0.36 |