Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB190_RS16960 Genome accession   NZ_CP011591
Coordinates   3238365..3239885 (-) Length   506 a.a.
NCBI ID   WP_023309657.1    Uniprot ID   -
Organism   Enterobacter asburiae strain CAV1043     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3233365..3244885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB190_RS16950 (AB190_16920) hdfR 3237057..3237878 (-) 822 WP_023309659.1 HTH-type transcriptional regulator HdfR -
  AB190_RS16955 (AB190_16925) - 3237997..3238335 (+) 339 WP_023309658.1 DUF413 domain-containing protein -
  AB190_RS16960 (AB190_16930) comM 3238365..3239885 (-) 1521 WP_023309657.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB190_RS25420 ilvL 3240226..3240324 (+) 99 WP_001311244.1 ilv operon leader peptide -
  AB190_RS26495 ilvX 3240411..3240461 (+) 51 WP_166792073.1 peptide IlvX -
  AB190_RS16965 (AB190_16935) ilvG 3240464..3242110 (+) 1647 WP_047743360.1 acetolactate synthase 2 catalytic subunit -
  AB190_RS16970 (AB190_16940) ilvM 3242107..3242370 (+) 264 WP_023309655.1 acetolactate synthase 2 small subunit -
  AB190_RS16975 (AB190_16945) ilvE 3242389..3243318 (+) 930 WP_023309654.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54923.85 Da        Isoelectric Point: 6.8204

>NTDB_id=147096 AB190_RS16960 WP_023309657.1 3238365..3239885(-) (comM) [Enterobacter asburiae strain CAV1043]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAEVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=147096 AB190_RS16960 WP_023309657.1 3238365..3239885(-) (comM) [Enterobacter asburiae strain CAV1043]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTGAGCAA
TGGGCTACCCGGACTCACTCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGAAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCCATTGCCCTTCTCGCGGCCTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGAGCAGGAC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTCATCGCAGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGGCGTCATGAACTGTCCGAGCCGGAGGAGTGTGATGATGCTATAGCGGATGCACC
AGAGGATCTCAGCGAGATTATGGGGCAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAATCTTC
TGTTAATTGGCCCGCCGGGTACGGGTAAAACCATGCTGGCAAGCAGGTTGAGTGGGTTACTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGTGCCGCCATATATAGCCTTATCAGTTCGACGTCGTTGCAAAAACAGTGGCGCCGTCGTCCTTTTCG
TTCCCCGCATCATAGCGCTTCACTGACGGCAATGGTCGGTGGCGGGGCGATTCCGGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTTGATGAGCTGCCTGAGTTTGAGCGCCGAGTGCTGGATGCACTGAGGGAGCCCATTGAATCC
GGTGAGATACATATCTCACGCACGCGAGCCAAAATAAGCTATCCCGCGCAGTTTCAGCTGGTCGCGGCGATGAATCCCAG
CCCGACGGGTCACTACCAGGGAAACCATAACCGCTGTACGCCAGAGCAGACGTTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATTCCCCTTCCCCCGCCGGGTCTGCTCAGGCAAACGGGCATAACGGGT
GAAAGCTCAGCGGAGGTACGCGAACGGGTGATTGCAGCCCAGACGCGGCAGTACGCTCGTCAGAACAGGCTGAATGCACG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCTCTTAACGTTGAGGATGCGGGATGGCTGGAGGAGACGTTGACGCGGT
TCGGGCTGTCCATAAGGGCGTGGCAGCGTTTGTTGAAGGTGGCCAGAACCATTGCTGACGTAGAGGGATGCACTGACATT
GAGAGGAAACATTTGCAAGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Vibrio cholerae strain A1552

58.367

99.209

0.579
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439

Multiple sequence alignment