Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PDR5_RS27940 Genome accession   NZ_CP011566
Coordinates   6183576..6185069 (+) Length   497 a.a.
NCBI ID   WP_064600355.1    Uniprot ID   -
Organism   Pseudomonas sp. DR 5-09     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6178576..6190069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDR5_RS27905 (PDR5_56230) - 6178676..6179380 (+) 705 WP_064600349.1 HAD-IA family hydrolase -
  PDR5_RS27910 (PDR5_56240) sutA 6179446..6179772 (-) 327 WP_007964546.1 transcriptional regulator SutA -
  PDR5_RS27915 (PDR5_56250) - 6179875..6180300 (-) 426 WP_064600351.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PDR5_RS27920 (PDR5_56260) - 6180516..6181853 (-) 1338 WP_007951904.1 ammonium transporter -
  PDR5_RS27925 (PDR5_56270) glnK 6181891..6182229 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  PDR5_RS27930 (PDR5_56280) - 6182628..6182888 (+) 261 WP_007920416.1 accessory factor UbiK family protein -
  PDR5_RS27935 (PDR5_56290) - 6183192..6183374 (-) 183 WP_064600353.1 HigA family addiction module antitoxin -
  PDR5_RS27940 (PDR5_56300) comM 6183576..6185069 (+) 1494 WP_064600355.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PDR5_RS27945 (PDR5_56310) - 6185438..6186604 (+) 1167 WP_064600357.1 hypothetical protein -
  PDR5_RS27950 (PDR5_56320) - 6186678..6187226 (+) 549 WP_064600359.1 adenylyl-sulfate kinase -
  PDR5_RS27955 (PDR5_56330) - 6187223..6187972 (+) 750 WP_064600361.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52841.02 Da        Isoelectric Point: 8.0442

>NTDB_id=146923 PDR5_RS27940 WP_064600355.1 6183576..6185069(+) (comM) [Pseudomonas sp. DR 5-09]
MSLAIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRTLVVPRANAEEACLASGLRVIAVDHL
LEAVAHFNGHTPVEPYVSDGLIHAAKPYPDLNEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLTE
SEALEVAAIQSVASGAPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GCIVIARAKERVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAVKP
GEDSASAATLVAEARERQQKRQGCANAFLDLPGLKKHCKLSTVDETWLESACERLTLSLRSAHRLLKVARTLADIEKVDA
ISREHLAEALQYRPATQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=146923 PDR5_RS27940 WP_064600355.1 6183576..6185069(+) (comM) [Pseudomonas sp. DR 5-09]
ATGTCCCTCGCCATCGTCCATAGCCGCGCCCAGATTGGCGTGGATGCTCCCGCCGTCACCGTCGAAGTTCACCTGGCCAA
CGGTTTGCCCTCTCTGACCATGGTCGGCTTGCCCGAAGCGGCGGTGAAGGAGAGCAAGGACCGGGTACGCAGTGCGATCA
TCAATTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACGTTGAATCTGGCACCGGCGGATCTGCCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCGCTGGGGATTCTGTCGGCGAGTGTGCAGGTGCCGACGTTGACGCTGGATGACGTGGAGTGCCT
TGGCGAACTGGCGTTGTCCGGCGCCGTGCGGGCGGTGCGCGGGGTGTTGCCGGCGGCGCTGGCAGCACGCAAAGCCGGGC
GGACGCTGGTGGTGCCACGGGCGAATGCCGAGGAGGCTTGTCTGGCGTCGGGACTGAGGGTGATTGCGGTGGATCATCTG
CTGGAGGCTGTGGCGCATTTCAATGGACATACACCGGTCGAACCTTATGTCTCGGACGGGCTGATCCATGCCGCCAAACC
CTATCCCGACCTGAATGAAGTCCAGGGCCAACTGGCGGCCAAACGGGCGCTGCTGATTGCCGCTGCCGGCGCCCACAACC
TGCTGTTCAGCGGGCCACCGGGGACGGGCAAGACATTGCTTGCCAGTCGTTTGCCAGGGCTGCTGCCACCGCTGACCGAG
AGTGAAGCGCTGGAAGTGGCGGCGATTCAATCCGTCGCCAGTGGCGCGCCGCTGACTCACTGGCCGCAACGCCCGTTCCG
CCAACCGCATCACTCGGCTTCCGGGCCGGCATTGGTCGGTGGCAGTTCAAAACCTCAGCCCGGCGAAATCACCCTGGCCC
ACCATGGCGTGCTGTTTCTCGATGAGCTGCCCGAGTTTGATCGCAAGGTGCTGGAGGTGCTGCGCGAACCGCTGGAATCC
GGCTGCATCGTGATCGCAAGGGCCAAGGAACGGGTGCGGTTTCCCGCGAGATTCCAGCTGGTCGCGGCGATGAATCCCTG
CCCCTGTGGATATCTCGGCGAACCGAGCGGCAAATGCTCATGCACACCGGACATGGTGCAGCGCTATCGCAACAAACTGT
CGGGGCCGTTGCTGGACCGAATCGATTTGCACCTCACAGTAGCGCGGGAGGCGACAGCGTTGAACCCTGCCGTGAAACCG
GGAGAAGACAGCGCCAGCGCGGCCACATTGGTCGCCGAGGCCCGCGAGCGTCAGCAAAAACGCCAGGGCTGCGCCAATGC
GTTTCTCGATTTGCCGGGGCTGAAGAAGCACTGCAAGTTATCCACAGTCGATGAAACCTGGCTGGAGTCAGCCTGTGAGC
GACTGACCCTGTCGCTGCGTTCAGCACATCGGCTGCTCAAGGTTGCACGGACACTGGCCGATATAGAGAAGGTTGATGCC
ATATCACGTGAGCATCTGGCCGAAGCGCTGCAGTATCGCCCAGCGACGCAATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.545

99.598

0.543
  comM Vibrio campbellii strain DS40M4

54.343

99.598

0.541
  comM Haemophilus influenzae Rd KW20

53.106

100

0.533
  comM Glaesserella parasuis strain SC1401

52.6

100

0.529
  comM Legionella pneumophila str. Paris

50

100

0.503
  comM Legionella pneumophila strain ERS1305867

50

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.618

100

0.461

Multiple sequence alignment