Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABA45_RS02725 Genome accession   NZ_CP011494
Coordinates   620847..622382 (+) Length   511 a.a.
NCBI ID   WP_048384243.1    Uniprot ID   A0A0H4I0W0
Organism   Marinobacter psychrophilus strain 20041     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 615847..627382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA45_RS02700 (ABA45_02700) - 616543..617184 (-) 642 WP_048384239.1 ChrR family anti-sigma-E factor -
  ABA45_RS02705 (ABA45_02705) - 617181..617780 (-) 600 WP_048384240.1 sigma-70 family RNA polymerase sigma factor -
  ABA45_RS19550 - 617966..618094 (-) 129 WP_264753024.1 hypothetical protein -
  ABA45_RS02710 (ABA45_02710) - 618477..619745 (-) 1269 WP_048384241.1 ammonium transporter -
  ABA45_RS02715 (ABA45_02715) glnK 619818..620156 (-) 339 WP_007350272.1 P-II family nitrogen regulator -
  ABA45_RS02720 (ABA45_02720) - 620567..620818 (+) 252 WP_048384242.1 accessory factor UbiK family protein -
  ABA45_RS02725 (ABA45_02725) comM 620847..622382 (+) 1536 WP_048384243.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABA45_RS02730 (ABA45_02730) trmB 622484..623224 (+) 741 WP_048384244.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ABA45_RS02735 (ABA45_02735) - 623289..623849 (-) 561 WP_048388619.1 hypothetical protein -
  ABA45_RS02740 (ABA45_02740) hemW 623932..625083 (-) 1152 WP_048384245.1 radical SAM family heme chaperone HemW -
  ABA45_RS02745 (ABA45_02745) rdgB 625080..625691 (-) 612 WP_048384246.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  ABA45_RS02750 (ABA45_02750) - 625714..626169 (-) 456 WP_048384247.1 DUF4426 domain-containing protein -
  ABA45_RS02755 (ABA45_02755) metW 626166..626771 (-) 606 WP_048384248.1 methionine biosynthesis protein MetW -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 53653.64 Da        Isoelectric Point: 7.7191

>NTDB_id=146327 ABA45_RS02725 WP_048384243.1 620847..622382(+) (comM) [Marinobacter psychrophilus strain 20041]
MLAIVQTRACVGVSAPAVSVEVHLSGGLPALSIVGLPETGVRESKERVRSALINAGFDFPARRITINLAPADLPKEGGRF
DLPIALGILAASGQIPAAALSTCEFVGELSLDGALRPLKGVLPAVLAARAEGRQLLVPQANAAEAALASEHDVLAASHLL
AVCEHLHGRARLVPLAPADLSGANSGQATIGPDLADVRGQQVPRRALEVAAAGGHNLLFFGPPGTGKSMLARRLPGIMPA
LADTAAMEVASVHSVAGLTVAEGGWRQPPFRAPHHTASAVAMVGGGSSPRPGEISLAHRGVLFLDELPEFERRVLEVLRE
PMETGEIHISRAARQVTFPARFQVVGAMNPCPCGYSGHPTIECQCSPAQIVRYRSKISGPLLDRFDLHVEVPVQGGDVFM
QHGEPGESSAQVRARVVAARCLQNARGALNAELSGKALQTACQLDSDSEQLLLRAMEKLGLSARALHRILRVARTLADLD
ASTDVARAHLVEALGYRQLDRRNGQSSLVSS

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=146327 ABA45_RS02725 WP_048384243.1 620847..622382(+) (comM) [Marinobacter psychrophilus strain 20041]
ATGCTTGCTATTGTTCAAACCCGCGCCTGTGTTGGCGTATCTGCGCCGGCGGTCAGCGTTGAAGTGCACCTGTCCGGCGG
TTTGCCTGCACTGTCGATTGTAGGTCTGCCAGAAACGGGCGTGCGCGAAAGTAAAGAACGAGTGCGCAGCGCCCTGATTA
ACGCCGGTTTTGATTTCCCCGCACGTCGTATTACCATCAATCTTGCCCCCGCCGACCTGCCCAAAGAGGGTGGCCGTTTT
GACTTGCCAATTGCCCTTGGCATTTTGGCGGCTTCTGGCCAAATTCCGGCCGCGGCGCTGAGCACCTGCGAGTTTGTCGG
TGAGCTGTCGCTAGATGGCGCATTGCGCCCGTTGAAAGGTGTATTACCGGCGGTTCTGGCGGCCCGCGCAGAGGGCCGCC
AACTTTTGGTGCCCCAAGCCAATGCCGCCGAGGCAGCATTGGCCAGTGAACACGACGTACTGGCCGCCAGCCATTTGTTG
GCTGTGTGCGAACATTTGCATGGTCGCGCTCGGCTTGTGCCGCTAGCGCCTGCGGATTTAAGCGGCGCCAACAGCGGACA
AGCGACAATTGGGCCGGATTTAGCCGATGTTCGGGGCCAACAGGTGCCGCGCAGGGCGTTAGAGGTGGCCGCTGCAGGCG
GTCACAATCTATTGTTTTTTGGCCCGCCTGGAACCGGTAAAAGCATGCTCGCCAGGCGTCTGCCGGGCATTATGCCGGCG
CTTGCCGACACCGCTGCGATGGAAGTGGCGAGTGTGCATTCTGTAGCCGGCCTGACAGTGGCCGAGGGCGGTTGGCGCCA
GCCGCCTTTTCGGGCGCCACACCACACGGCTTCGGCGGTGGCTATGGTCGGTGGCGGCAGCAGTCCGCGGCCCGGGGAGA
TTTCTTTGGCTCATCGCGGCGTGTTGTTTTTGGACGAACTTCCAGAATTTGAACGGCGGGTGCTGGAAGTGCTGCGTGAA
CCTATGGAAACCGGCGAAATTCACATCAGCCGAGCTGCACGCCAGGTTACATTCCCCGCCCGCTTTCAGGTTGTCGGTGC
GATGAACCCGTGCCCCTGTGGTTACAGCGGCCATCCCACTATCGAATGCCAGTGTAGTCCCGCCCAAATTGTTCGTTATC
GCTCGAAGATTTCTGGCCCGTTGTTGGACCGTTTCGATTTGCACGTAGAAGTGCCGGTGCAAGGTGGTGATGTGTTTATG
CAGCACGGTGAGCCCGGCGAGAGCAGCGCTCAGGTGCGGGCGCGAGTCGTAGCGGCTCGTTGCTTGCAGAACGCCAGAGG
TGCGTTGAACGCCGAGTTGTCGGGCAAGGCGCTGCAAACGGCTTGTCAGCTTGATAGTGACAGTGAGCAACTGCTATTGA
GGGCAATGGAAAAACTCGGGCTGTCTGCTCGTGCCTTGCATCGGATACTACGGGTGGCACGTACACTGGCGGACCTAGAT
GCCAGTACTGACGTAGCCCGCGCCCATCTGGTGGAAGCCTTGGGCTATCGGCAGCTAGACCGCCGCAACGGTCAAAGCTC
TCTGGTTTCGTCTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H4I0W0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.455

98.826

0.538
  comM Vibrio campbellii strain DS40M4

54.582

98.239

0.536
  comM Glaesserella parasuis strain SC1401

54.473

98.434

0.536
  comM Vibrio cholerae strain A1552

54.092

98.043

0.53
  comM Legionella pneumophila str. Paris

50.6

97.847

0.495
  comM Legionella pneumophila strain ERS1305867

50.6

97.847

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.289

100

0.464

Multiple sequence alignment