Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | AA974_RS00080 | Genome accession | NZ_CP011487 |
| Coordinates | 13425..14561 (+) | Length | 378 a.a. |
| NCBI ID | WP_064432893.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain PNG84A | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 8425..19561
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA974_RS00045 (AA974_00050) | panD | 8897..9247 (+) | 351 | WP_064432889.1 | aspartate 1-decarboxylase | - |
| AA974_RS00050 (AA974_00055) | - | 9258..9551 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| AA974_RS00055 (AA974_00060) | - | 9551..10546 (+) | 996 | WP_064432890.1 | PDZ domain-containing protein | - |
| AA974_RS00060 (AA974_00065) | comB6 | 10552..11604 (+) | 1053 | WP_064434028.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| AA974_RS00065 (AA974_00070) | comB7 | 11620..11733 (+) | 114 | WP_001217871.1 | hypothetical protein | Machinery gene |
| AA974_RS00070 (AA974_00075) | comB8 | 11730..12473 (+) | 744 | WP_064432891.1 | type IV secretion system protein | Machinery gene |
| AA974_RS00075 (AA974_00080) | comB9 | 12473..13432 (+) | 960 | WP_064432892.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| AA974_RS00080 (AA974_00085) | comB10 | 13425..14561 (+) | 1137 | WP_064432893.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| AA974_RS00085 (AA974_00090) | - | 14631..16049 (+) | 1419 | WP_064432894.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| AA974_RS00090 (AA974_00095) | gmd | 16059..17204 (+) | 1146 | WP_064432895.1 | GDP-mannose 4,6-dehydratase | - |
| AA974_RS00095 (AA974_00100) | - | 17197..18129 (+) | 933 | WP_064432896.1 | GDP-L-fucose synthase family protein | - |
| AA974_RS00100 (AA974_00105) | hypE | 18316..19314 (-) | 999 | WP_064432897.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42218.91 Da Isoelectric Point: 9.8940
>NTDB_id=146294 AA974_RS00080 WP_064432893.1 13425..14561(+) (comB10) [Helicobacter pylori strain PNG84A]
MNKWVKGALVFVGGFAAIITISLIYHQKPKAPLNNQSNLLNDDEVKYPLQDYTFTQSPQPIPTESSKDATIKALQEQLKA
ALKALNSKEMSYSKEETFKNPSIDPKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLILKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWVKGALVFVGGFAAIITISLIYHQKPKAPLNNQSNLLNDDEVKYPLQDYTFTQSPQPIPTESSKDATIKALQEQLKA
ALKALNSKEMSYSKEETFKNPSIDPKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLILKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=146294 AA974_RS00080 WP_064432893.1 13425..14561(+) (comB10) [Helicobacter pylori strain PNG84A]
ATGAATAAGTGGGTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTCGCAGCGATTATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCTCTAAATAACCAATCTAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAGCCCGCAGCCAATTCCTACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAGCTATTCTAAAGAAGAAACTTTTAAGAACCCTTCCATAGATCCAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTTTAAAGCAATTGGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCTCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGATTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCATTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGTAGGGTTTTCATTTCGCCTAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA
ATGAATAAGTGGGTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTCGCAGCGATTATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCTCTAAATAACCAATCTAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAGCCCGCAGCCAATTCCTACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAGCTATTCTAAAGAAGAAACTTTTAAGAACCCTTCCATAGATCCAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTTTAAAGCAATTGGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCTCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGATTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCATTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGTAGGGTTTTCATTTCGCCTAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
94.18 |
100 |
0.942 |