Detailed information NTG0146290

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: AA974_RS00060
• Genome accession: NZ_CP011487
• Coordinates: 10552..11604 (+)
• Length: 350 a.a.
• NCBI ID: WP_064434028.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PNG84A
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5552..16604

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AA974_RS00030 (AA974_00035)	-	6082..6495 (+)	414	WP_001023005.1	universal stress protein	-
AA974_RS00035 (AA974_00040)	-	6497..6685 (+)	189	WP_080470962.1	ATP-dependent Clp protease adaptor ClpS	-
AA974_RS00040 (AA974_00045)	-	6685..8907 (+)	2223	WP_064432888.1	AAA family ATPase	-
AA974_RS00045 (AA974_00050)	panD	8897..9247 (+)	351	WP_064432889.1	aspartate 1-decarboxylase	-
AA974_RS00050 (AA974_00055)	-	9258..9551 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
AA974_RS00055 (AA974_00060)	-	9551..10546 (+)	996	WP_064432890.1	PDZ domain-containing protein	-
AA974_RS00060 (AA974_00065)	comB6	10552..11604 (+)	1053	WP_064434028.1	P-type conjugative transfer protein TrbL	Machinery gene
AA974_RS00065 (AA974_00070)	comB7	11620..11733 (+)	114	WP_001217871.1	hypothetical protein	Machinery gene
AA974_RS00070 (AA974_00075)	comB8	11730..12473 (+)	744	WP_064432891.1	type IV secretion system protein	Machinery gene
AA974_RS00075 (AA974_00080)	comB9	12473..13432 (+)	960	WP_064432892.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
AA974_RS00080 (AA974_00085)	comB10	13425..14561 (+)	1137	WP_064432893.1	DNA type IV secretion system protein ComB10	Machinery gene
AA974_RS00085 (AA974_00090)	-	14631..16049 (+)	1419	WP_064432894.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 350 a.a.
• Molecular weight: 39797.91 Da
• Isoelectric Point: 8.5786

>NTDB_id=146290 AA974_RS00060 WP_064434028.1 10552..11604(+) (comB6) [Helicobacter pylori strain PNG84A]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSMVALAFMLFAYRSMKEQNFFSASALLEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIVQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSIVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSSMSESVSKEKETHSPTF
KVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1053 bp

>NTDB_id=146290 AA974_RS00060 WP_064434028.1 10552..11604(+) (comB6) [Helicobacter pylori strain PNG84A]
ATGAAAAATGACGCTTATGAGATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTATACTTTGCATGCGCAATTGGTGTTTAATAGCATGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCA
TGAAAGAACAGAATTTCTTCAGCGCCAGCGCGCTTTTAGAAGCGTTATTATTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTACGAATTTTTCCAAAACGCTATTTTTATTGCACCTAACATGATCGTGCAAAGTCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGTATCTTGCAAGCCCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAGACCTGGAGGAGCATTGTGGTGGCATGCTTAAAAAAATGCTTCGCTCTTGGATTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTATAAACTCGCCACAAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACCCCACCCGCTCCTTCTAGCGTTTCTTCTATGAGCGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACATTT
AAGGTAGAAACCACTCAATTAGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATACAAA
AAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.866	100	0.971