Detailed information NTG0146293

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: AA974_RS00075
• Genome accession: NZ_CP011487
• Coordinates: 12473..13432 (+)
• Length: 319 a.a.
• NCBI ID: WP_064432892.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PNG84A
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 7473..18432

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AA974_RS00045 (AA974_00050)	panD	8897..9247 (+)	351	WP_064432889.1	aspartate 1-decarboxylase	-
AA974_RS00050 (AA974_00055)	-	9258..9551 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
AA974_RS00055 (AA974_00060)	-	9551..10546 (+)	996	WP_064432890.1	PDZ domain-containing protein	-
AA974_RS00060 (AA974_00065)	comB6	10552..11604 (+)	1053	WP_064434028.1	P-type conjugative transfer protein TrbL	Machinery gene
AA974_RS00065 (AA974_00070)	comB7	11620..11733 (+)	114	WP_001217871.1	hypothetical protein	Machinery gene
AA974_RS00070 (AA974_00075)	comB8	11730..12473 (+)	744	WP_064432891.1	type IV secretion system protein	Machinery gene
AA974_RS00075 (AA974_00080)	comB9	12473..13432 (+)	960	WP_064432892.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
AA974_RS00080 (AA974_00085)	comB10	13425..14561 (+)	1137	WP_064432893.1	DNA type IV secretion system protein ComB10	Machinery gene
AA974_RS00085 (AA974_00090)	-	14631..16049 (+)	1419	WP_064432894.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
AA974_RS00090 (AA974_00095)	gmd	16059..17204 (+)	1146	WP_064432895.1	GDP-mannose 4,6-dehydratase	-
AA974_RS00095 (AA974_00100)	-	17197..18129 (+)	933	WP_064432896.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36698.34 Da
• Isoelectric Point: 9.6457

>NTDB_id=146293 AA974_RS00075 WP_064432892.1 12473..13432(+) (comB9) [Helicobacter pylori strain PNG84A]
MRKVLYALAGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNVSVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENILENALKNNKPLKEETKEKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSKL
SLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKNE

Nucleotide

• Length: 960 bp

>NTDB_id=146293 AA974_RS00075 WP_064432892.1 12473..13432(+) (comB9) [Helicobacter pylori strain PNG84A]
ATGCGTAAGGTTTTATACGCTCTTGCGGGTTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAGGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTACTTATCAAACCCTTACAAATTGGCGTGGATTCTAATGTCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAATAAAGAAAATATCCTTGAAAATGCCCTTAAAAACAACAAACCCTTAAA
AGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCCATGAAAATCGTTAAAAAAGACA
TTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAACTC
TCCTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTTAAATTTGACAAAAAATTAGCGCTCTCTAAATT
CCCAGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTGTGGGCGATTACATTATCGCTGAAG
ATGTCTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGTATTCGTTTTATCAAAAAGGGTAAAAATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-310)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	94.172	100	0.962