Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | AA977_RS00215 | Genome accession | NZ_CP011486 |
| Coordinates | 39401..40543 (+) | Length | 380 a.a. |
| NCBI ID | WP_064434120.1 | Uniprot ID | A0A1A9HCH4 |
| Organism | Helicobacter pylori strain K26A1 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 34401..45543
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA977_RS00180 (AA977_00185) | panD | 34843..35193 (+) | 351 | WP_064434116.1 | aspartate 1-decarboxylase | - |
| AA977_RS00185 (AA977_00190) | - | 35204..35497 (+) | 294 | WP_000347932.1 | YbaB/EbfC family nucleoid-associated protein | - |
| AA977_RS00190 (AA977_00195) | - | 35497..36492 (+) | 996 | WP_064434117.1 | PDZ domain-containing protein | - |
| AA977_RS00195 (AA977_00200) | comB6 | 36498..37562 (+) | 1065 | WP_064435164.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| AA977_RS00200 (AA977_00205) | comB7 | 37578..37691 (+) | 114 | WP_001217877.1 | hypothetical protein | Machinery gene |
| AA977_RS00205 (AA977_00210) | comB8 | 37688..38431 (+) | 744 | WP_064434118.1 | virB8 family protein | Machinery gene |
| AA977_RS00210 (AA977_00215) | comB9 | 38431..39408 (+) | 978 | WP_064434119.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| AA977_RS00215 (AA977_00220) | comB10 | 39401..40543 (+) | 1143 | WP_064434120.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| AA977_RS00220 (AA977_00225) | - | 40609..42021 (+) | 1413 | WP_064434121.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| AA977_RS00225 (AA977_00230) | gmd | 42040..43185 (+) | 1146 | WP_064434122.1 | GDP-mannose 4,6-dehydratase | - |
| AA977_RS00230 (AA977_00235) | - | 43178..44110 (+) | 933 | WP_001002514.1 | GDP-L-fucose synthase | - |
| AA977_RS08015 | - | 44476..44697 (-) | 222 | Protein_40 | hypothetical protein | - |
| AA977_RS00235 (AA977_00245) | - | 44891..45073 (-) | 183 | WP_253764844.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 380 a.a. Molecular weight: 42392.07 Da Isoelectric Point: 9.6776
>NTDB_id=146276 AA977_RS00215 WP_064434120.1 39401..40543(+) (comB10) [Helicobacter pylori strain K26A1]
MNKWLKGVLIVAGGFVTITTISLIYHQKPKAPLNNPPALLNDDEVKYPLQDYTFTPSFQPTPTENSKDATIKALQEQLRA
ALKALNSKEINFPKEETKELTNPPIEPKANTAPPKKDFSLKQLDLLASRITPFKQNPKNYEENLIFPVDNPKGIDGFTNL
KEKDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIV
WSRIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEATNFFGDYLLM
QLMRQSGMGINQVVNQILRDKSKIAPIVIIREGSRVFISPNTDIFFPIPRDNEVIAEFLE
MNKWLKGVLIVAGGFVTITTISLIYHQKPKAPLNNPPALLNDDEVKYPLQDYTFTPSFQPTPTENSKDATIKALQEQLRA
ALKALNSKEINFPKEETKELTNPPIEPKANTAPPKKDFSLKQLDLLASRITPFKQNPKNYEENLIFPVDNPKGIDGFTNL
KEKDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIV
WSRIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEATNFFGDYLLM
QLMRQSGMGINQVVNQILRDKSKIAPIVIIREGSRVFISPNTDIFFPIPRDNEVIAEFLE
Nucleotide
Download Length: 1143 bp
>NTDB_id=146276 AA977_RS00215 WP_064434120.1 39401..40543(+) (comB10) [Helicobacter pylori strain K26A1]
ATGAATAAATGGCTCAAAGGGGTGCTGATTGTTGCAGGGGGTTTTGTAACGATTACAACAATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCTTAAACAACCCACCCGCTCTTTTAAATGACGATGAGGTGAAATACCCCTTACAGGATTACACTT
TCACTCCAAGCTTTCAACCAACCCCCACAGAAAACTCCAAAGACGCCACTATAAAAGCCTTACAAGAACAGCTAAGAGCC
GCTTTAAAAGCCCTAAATTCCAAAGAAATAAACTTTCCTAAAGAAGAAACTAAAGAACTTACCAACCCTCCCATAGAACC
AAAAGCAAACACAGCCCCCCCTAAAAAAGACTTTTCCCTAAAACAATTAGATTTATTAGCCTCTCGCATCACCCCTTTCA
AACAAAACCCTAAAAATTACGAAGAAAACTTGATTTTCCCGGTGGATAACCCTAAAGGGATCGATGGCTTTACTAACCTT
AAAGAAAAAGACATCGCCACCAATGAAAACAAACTCCTGCGCACCATTACAGCGGATAAAATGATACCTGCATTTTTGAT
CACGCCTATTTCTAGCCAGATTGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGAAAGGCTG
TTTTAATCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTA
TGGAGTAGGATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGG
CTTGGTGGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCTTTATTACTTTCTACGCTCACTAACGGCTTAT
TGATTGGGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGCGACTAATTTTTTTGGGGATTATCTTTTAATG
CAATTGATGAGGCAAAGCGGTATGGGGATCAACCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCCCCCAT
TGTCATCATTAGAGAGGGGAGCAGGGTATTCATTTCGCCTAATACTGACATTTTCTTCCCTATACCCAGAGACAATGAAG
TCATCGCTGAATTTTTGGAGTGA
ATGAATAAATGGCTCAAAGGGGTGCTGATTGTTGCAGGGGGTTTTGTAACGATTACAACAATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCTTAAACAACCCACCCGCTCTTTTAAATGACGATGAGGTGAAATACCCCTTACAGGATTACACTT
TCACTCCAAGCTTTCAACCAACCCCCACAGAAAACTCCAAAGACGCCACTATAAAAGCCTTACAAGAACAGCTAAGAGCC
GCTTTAAAAGCCCTAAATTCCAAAGAAATAAACTTTCCTAAAGAAGAAACTAAAGAACTTACCAACCCTCCCATAGAACC
AAAAGCAAACACAGCCCCCCCTAAAAAAGACTTTTCCCTAAAACAATTAGATTTATTAGCCTCTCGCATCACCCCTTTCA
AACAAAACCCTAAAAATTACGAAGAAAACTTGATTTTCCCGGTGGATAACCCTAAAGGGATCGATGGCTTTACTAACCTT
AAAGAAAAAGACATCGCCACCAATGAAAACAAACTCCTGCGCACCATTACAGCGGATAAAATGATACCTGCATTTTTGAT
CACGCCTATTTCTAGCCAGATTGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGAAAGGCTG
TTTTAATCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTA
TGGAGTAGGATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGG
CTTGGTGGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCTTTATTACTTTCTACGCTCACTAACGGCTTAT
TGATTGGGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGCGACTAATTTTTTTGGGGATTATCTTTTAATG
CAATTGATGAGGCAAAGCGGTATGGGGATCAACCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCCCCCAT
TGTCATCATTAGAGAGGGGAGCAGGGTATTCATTTCGCCTAATACTGACATTTTCTTCCCTATACCCAGAGACAATGAAG
TCATCGCTGAATTTTTGGAGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
91.579 |
100 |
0.916 |