Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | AA977_RS00195 | Genome accession | NZ_CP011486 |
| Coordinates | 36498..37562 (+) | Length | 354 a.a. |
| NCBI ID | WP_064435164.1 | Uniprot ID | A0A1A9HF11 |
| Organism | Helicobacter pylori strain K26A1 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 31498..42562
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA977_RS00165 (AA977_00170) | - | 31941..32354 (+) | 414 | WP_001023012.1 | universal stress protein | - |
| AA977_RS00170 (AA977_00175) | - | 32356..32631 (+) | 276 | WP_033738812.1 | ATP-dependent Clp protease adaptor ClpS | - |
| AA977_RS00175 (AA977_00180) | - | 32631..34853 (+) | 2223 | WP_064434115.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| AA977_RS00180 (AA977_00185) | panD | 34843..35193 (+) | 351 | WP_064434116.1 | aspartate 1-decarboxylase | - |
| AA977_RS00185 (AA977_00190) | - | 35204..35497 (+) | 294 | WP_000347932.1 | YbaB/EbfC family nucleoid-associated protein | - |
| AA977_RS00190 (AA977_00195) | - | 35497..36492 (+) | 996 | WP_064434117.1 | PDZ domain-containing protein | - |
| AA977_RS00195 (AA977_00200) | comB6 | 36498..37562 (+) | 1065 | WP_064435164.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| AA977_RS00200 (AA977_00205) | comB7 | 37578..37691 (+) | 114 | WP_001217877.1 | hypothetical protein | Machinery gene |
| AA977_RS00205 (AA977_00210) | comB8 | 37688..38431 (+) | 744 | WP_064434118.1 | virB8 family protein | Machinery gene |
| AA977_RS00210 (AA977_00215) | comB9 | 38431..39408 (+) | 978 | WP_064434119.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| AA977_RS00215 (AA977_00220) | comB10 | 39401..40543 (+) | 1143 | WP_064434120.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| AA977_RS00220 (AA977_00225) | - | 40609..42021 (+) | 1413 | WP_064434121.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 354 a.a. Molecular weight: 40159.09 Da Isoelectric Point: 8.5826
>NTDB_id=146272 AA977_RS00195 WP_064435164.1 36498..37562(+) (comB6) [Helicobacter pylori strain K26A1]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQFVFNSTVALAFMLFAYKSLKEQNFFSASAILEALWFVGFFALFNY
ALKNPSHFYEFFQNAIFILPNMLTHALSQSLSNFSNHTLSLDFIFNHGFYALSFISDLNHNEISVWLFLSVLQALFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVFACLKKCLALGFYKPFLLLVGFLNVSVTKALINAHMQEQQELSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQSALASLQYITTPPVTTTPSSASAFASESVSKEKETH
SPTFKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQFVFNSTVALAFMLFAYKSLKEQNFFSASAILEALWFVGFFALFNY
ALKNPSHFYEFFQNAIFILPNMLTHALSQSLSNFSNHTLSLDFIFNHGFYALSFISDLNHNEISVWLFLSVLQALFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVFACLKKCLALGFYKPFLLLVGFLNVSVTKALINAHMQEQQELSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQSALASLQYITTPPVTTTPSSASAFASESVSKEKETH
SPTFKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1065 bp
>NTDB_id=146272 AA977_RS00195 WP_064435164.1 36498..37562(+) (comB6) [Helicobacter pylori strain K26A1]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACACCGCTCACGGCGATTTTAGGGCGTTTTGCTGAATT
TTTCCTCTACACTTTGCATGCGCAATTCGTGTTCAATAGCACGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAAAAGTT
TGAAAGAGCAGAATTTTTTCAGCGCTAGCGCGATTTTAGAAGCGTTATGGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAACCCTTCGCATTTTTATGAATTTTTTCAAAACGCAATTTTTATTTTGCCCAACATGCTCACCCATGCCCT
TTCTCAAAGCTTGAGTAACTTTTCCAACCACACGCTTTCATTGGATTTTATCTTCAATCATGGGTTTTATGCCCTTAGTT
TTATCAGCGATTTGAACCATAATGAAATATCTGTGTGGCTTTTTTTAAGCGTTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTCGTGTTTGCATGCCTTAAAAAATGCCTAGCCCTTGGGTTTTACAAGCCTTTTTTATTGTTGG
TTGGGTTTTTGAACGTATCGGTTACTAAAGCCTTAATCAACGCTCATATGCAAGAACAACAAGAATTGAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAATAG
CCTTAAAGAAACTTACAAACTCGCTACAAATTTGAGCGCTAACCTCAGCCAAAGCGCTTTGGCTTCCTTACAATACATTA
CTACCCCACCTGTTACTACCACTCCCTCTAGCGCTTCTGCTTTTGCAAGCGAAAGCGTCTCTAAAGAAAAGGAAACGCAT
TCCCCCACATTCAAGGTAGAAACTACCCAATTAGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATAC
AATAAATACAAAAAACGAAATTTAA
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACACCGCTCACGGCGATTTTAGGGCGTTTTGCTGAATT
TTTCCTCTACACTTTGCATGCGCAATTCGTGTTCAATAGCACGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAAAAGTT
TGAAAGAGCAGAATTTTTTCAGCGCTAGCGCGATTTTAGAAGCGTTATGGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAACCCTTCGCATTTTTATGAATTTTTTCAAAACGCAATTTTTATTTTGCCCAACATGCTCACCCATGCCCT
TTCTCAAAGCTTGAGTAACTTTTCCAACCACACGCTTTCATTGGATTTTATCTTCAATCATGGGTTTTATGCCCTTAGTT
TTATCAGCGATTTGAACCATAATGAAATATCTGTGTGGCTTTTTTTAAGCGTTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTCGTGTTTGCATGCCTTAAAAAATGCCTAGCCCTTGGGTTTTACAAGCCTTTTTTATTGTTGG
TTGGGTTTTTGAACGTATCGGTTACTAAAGCCTTAATCAACGCTCATATGCAAGAACAACAAGAATTGAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAATAG
CCTTAAAGAAACTTACAAACTCGCTACAAATTTGAGCGCTAACCTCAGCCAAAGCGCTTTGGCTTCCTTACAATACATTA
CTACCCCACCTGTTACTACCACTCCCTCTAGCGCTTCTGCTTTTGCAAGCGAAAGCGTCTCTAAAGAAAAGGAAACGCAT
TCCCCCACATTCAAGGTAGAAACTACCCAATTAGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATAC
AATAAATACAAAAAACGAAATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
89.266 |
100 |
0.893 |