Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | AA973_RS00215 | Genome accession | NZ_CP011485 |
| Coordinates | 38657..39793 (+) | Length | 378 a.a. |
| NCBI ID | WP_064437130.1 | Uniprot ID | A0A1A9H9U7 |
| Organism | Helicobacter pylori strain ausabrJ05 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 33657..44793
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA973_RS00185 (AA973_00180) | panD | 34121..34471 (+) | 351 | WP_000142282.1 | aspartate 1-decarboxylase | - |
| AA973_RS00190 (AA973_00185) | - | 34482..34775 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| AA973_RS00195 (AA973_00190) | - | 34775..35770 (+) | 996 | WP_064437126.1 | PDZ domain-containing protein | - |
| AA973_RS00200 (AA973_00195) | comB6 | 35778..36833 (+) | 1056 | WP_064437127.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| AA973_RS07335 | comB7 | 36849..36962 (+) | 114 | WP_001217871.1 | hypothetical protein | Machinery gene |
| AA973_RS00205 (AA973_00200) | comB8 | 36959..37702 (+) | 744 | WP_064437128.1 | type IV secretion system protein | Machinery gene |
| AA973_RS00210 (AA973_00205) | comB9 | 37702..38664 (+) | 963 | WP_064437129.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| AA973_RS00215 (AA973_00210) | comB10 | 38657..39793 (+) | 1137 | WP_064437130.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| AA973_RS00220 (AA973_00215) | - | 39863..41281 (+) | 1419 | WP_064437131.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| AA973_RS00225 (AA973_00220) | gmd | 41291..42436 (+) | 1146 | WP_064437132.1 | GDP-mannose 4,6-dehydratase | - |
| AA973_RS00230 (AA973_00225) | - | 42429..43361 (+) | 933 | WP_064437133.1 | GDP-L-fucose synthase family protein | - |
| AA973_RS00235 (AA973_00230) | hypE | 43660..44658 (-) | 999 | WP_064437134.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42252.93 Da Isoelectric Point: 9.9637
>NTDB_id=146254 AA973_RS00215 WP_064437130.1 38657..39793(+) (comB10) [Helicobacter pylori strain ausabrJ05]
MNKWLKGALVFVGGFIAVTTISLLYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTPIESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKNPPIDPKINTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKTGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRSNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGALVFVGGFIAVTTISLLYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTPIESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKNPPIDPKINTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKTGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRSNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=146254 AA973_RS00215 WP_064437130.1 38657..39793(+) (comB10) [Helicobacter pylori strain ausabrJ05]
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTATAGCGGTTACAACAATTTCTTTACTCTATCATCA
AAAGCCAAAAGCCCCCCTGAATAACCAACCAAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCGCAGCCAACTCCTATAGAAAGTTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCTAAAGAAGAAACTTTTAAGAACCCTCCAATAGATCCAAAAAT
AAACACAACCCCCCCTAAAAAAGACTTTTCTTTAAAGCAATTGGATTTATTAGCCTCTCGCATCACCCCCTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAGGCTGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAATAAAACGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATTAATATTATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGATTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCATTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GAATCACTTCGGCTTTAAACAACAGAAGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTATAGCGGTTACAACAATTTCTTTACTCTATCATCA
AAAGCCAAAAGCCCCCCTGAATAACCAACCAAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCGCAGCCAACTCCTATAGAAAGTTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCTAAAGAAGAAACTTTTAAGAACCCTCCAATAGATCCAAAAAT
AAACACAACCCCCCCTAAAAAAGACTTTTCTTTAAAGCAATTGGATTTATTAGCCTCTCGCATCACCCCCTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAGGCTGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAATAAAACGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATTAATATTATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGATTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCATTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GAATCACTTCGGCTTTAAACAACAGAAGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.503 |
100 |
0.955 |