Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | AA973_RS00200 | Genome accession | NZ_CP011485 |
| Coordinates | 35778..36833 (+) | Length | 351 a.a. |
| NCBI ID | WP_064437127.1 | Uniprot ID | A0A1A9H9A3 |
| Organism | Helicobacter pylori strain ausabrJ05 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 30778..41833
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA973_RS00170 (AA973_00165) | - | 31219..31632 (+) | 414 | WP_001022998.1 | universal stress protein | - |
| AA973_RS00175 (AA973_00170) | - | 31634..31909 (+) | 276 | WP_064437124.1 | ATP-dependent Clp protease adaptor ClpS | - |
| AA973_RS00180 (AA973_00175) | - | 31909..34131 (+) | 2223 | WP_064437125.1 | AAA family ATPase | - |
| AA973_RS00185 (AA973_00180) | panD | 34121..34471 (+) | 351 | WP_000142282.1 | aspartate 1-decarboxylase | - |
| AA973_RS00190 (AA973_00185) | - | 34482..34775 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| AA973_RS00195 (AA973_00190) | - | 34775..35770 (+) | 996 | WP_064437126.1 | PDZ domain-containing protein | - |
| AA973_RS00200 (AA973_00195) | comB6 | 35778..36833 (+) | 1056 | WP_064437127.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| AA973_RS07335 | comB7 | 36849..36962 (+) | 114 | WP_001217871.1 | hypothetical protein | Machinery gene |
| AA973_RS00205 (AA973_00200) | comB8 | 36959..37702 (+) | 744 | WP_064437128.1 | type IV secretion system protein | Machinery gene |
| AA973_RS00210 (AA973_00205) | comB9 | 37702..38664 (+) | 963 | WP_064437129.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| AA973_RS00215 (AA973_00210) | comB10 | 38657..39793 (+) | 1137 | WP_064437130.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| AA973_RS00220 (AA973_00215) | - | 39863..41281 (+) | 1419 | WP_064437131.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39814.84 Da Isoelectric Point: 8.8165
>NTDB_id=146251 AA973_RS00200 WP_064437127.1 35778..36833(+) (comB6) [Helicobacter pylori strain ausabrJ05]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFLSTSALLEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRIVVIACLKKCFALGFYKPFLLLVGFLNVSVTKALINAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSTNESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFLSTSALLEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRIVVIACLKKCFALGFYKPFLLLVGFLNVSVTKALINAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSTNESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=146251 AA973_RS00200 WP_064437127.1 35778..36833(+) (comB6) [Helicobacter pylori strain ausabrJ05]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTTACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTCCTCAGCACTAGCGCGCTTTTAGAAGCGTTATTATTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTCTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAACCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTGAGCATTTTGCAAGCCCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGAATCGTTGTGATAGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAAACGCTCACATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGTGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTGAAAGAAACTTACAAACTCGCCACAAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTACAAACGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTTACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTCCTCAGCACTAGCGCGCTTTTAGAAGCGTTATTATTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTCTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAACCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTGAGCATTTTGCAAGCCCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGAATCGTTGTGATAGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAAACGCTCACATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGTGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTGAAAGAAACTTACAAACTCGCCACAAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTACAAACGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
96.581 |
100 |
0.966 |