Detailed information NTG0146253

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: AA973_RS00210
• Genome accession: NZ_CP011485
• Coordinates: 37702..38664 (+)
• Length: 320 a.a.
• NCBI ID: WP_064437129.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain ausabrJ05
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 32702..43664

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AA973_RS00185 (AA973_00180)	panD	34121..34471 (+)	351	WP_000142282.1	aspartate 1-decarboxylase	-
AA973_RS00190 (AA973_00185)	-	34482..34775 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
AA973_RS00195 (AA973_00190)	-	34775..35770 (+)	996	WP_064437126.1	PDZ domain-containing protein	-
AA973_RS00200 (AA973_00195)	comB6	35778..36833 (+)	1056	WP_064437127.1	P-type conjugative transfer protein TrbL	Machinery gene
AA973_RS07335	comB7	36849..36962 (+)	114	WP_001217871.1	hypothetical protein	Machinery gene
AA973_RS00205 (AA973_00200)	comB8	36959..37702 (+)	744	WP_064437128.1	type IV secretion system protein	Machinery gene
AA973_RS00210 (AA973_00205)	comB9	37702..38664 (+)	963	WP_064437129.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
AA973_RS00215 (AA973_00210)	comB10	38657..39793 (+)	1137	WP_064437130.1	DNA type IV secretion system protein ComB10	Machinery gene
AA973_RS00220 (AA973_00215)	-	39863..41281 (+)	1419	WP_064437131.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
AA973_RS00225 (AA973_00220)	gmd	41291..42436 (+)	1146	WP_064437132.1	GDP-mannose 4,6-dehydratase	-
AA973_RS00230 (AA973_00225)	-	42429..43361 (+)	933	WP_064437133.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 37050.60 Da
• Isoelectric Point: 9.3563

>NTDB_id=146253 AA973_RS00210 WP_064437129.1 37702..38664(+) (comB9) [Helicobacter pylori strain ausabrJ05]
MRKVLWILMGFLLAFSALKADDFLEEANETAPTNLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQKEKENKENTLENAQKNNKKEEKEKEEETITIGDHTNAIKIVKKDIQKGYRALKSSQRKWYCLGVCSEKSK
PSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=146253 AA973_RS00210 WP_064437129.1 37702..38664(+) (comB9) [Helicobacter pylori strain ausabrJ05]
ATGCGTAAGGTTTTATGGATTCTTATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAACGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTAAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATCAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCAAAAATTTTAGAAAG
TAACGATCGCATTTTACTCATCAAACCCTTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCTAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCCCAAAAAGAAAAAGAAAATAAAGAAAATACCCTTGAAAATGCCCAAAAAAACAA
TAAAAAAGAAGAAAAAGAAAAAGAAGAAGAGACTATAACCATTGGCGATCACACTAATGCCATAAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGGTTTGTTCTGAAAAATCCAAA
CCCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	89.877	100	0.916