Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   AA973_RS00205 Genome accession   NZ_CP011485
Coordinates   36959..37702 (+) Length   247 a.a.
NCBI ID   WP_064437128.1    Uniprot ID   -
Organism   Helicobacter pylori strain ausabrJ05     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 31959..42702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA973_RS00185 (AA973_00180) panD 34121..34471 (+) 351 WP_000142282.1 aspartate 1-decarboxylase -
  AA973_RS00190 (AA973_00185) - 34482..34775 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  AA973_RS00195 (AA973_00190) - 34775..35770 (+) 996 WP_064437126.1 PDZ domain-containing protein -
  AA973_RS00200 (AA973_00195) comB6 35778..36833 (+) 1056 WP_064437127.1 P-type conjugative transfer protein TrbL Machinery gene
  AA973_RS07335 comB7 36849..36962 (+) 114 WP_001217871.1 hypothetical protein Machinery gene
  AA973_RS00205 (AA973_00200) comB8 36959..37702 (+) 744 WP_064437128.1 type IV secretion system protein Machinery gene
  AA973_RS00210 (AA973_00205) comB9 37702..38664 (+) 963 WP_064437129.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  AA973_RS00215 (AA973_00210) comB10 38657..39793 (+) 1137 WP_064437130.1 DNA type IV secretion system protein ComB10 Machinery gene
  AA973_RS00220 (AA973_00215) - 39863..41281 (+) 1419 WP_064437131.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  AA973_RS00225 (AA973_00220) gmd 41291..42436 (+) 1146 WP_064437132.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28689.87 Da        Isoelectric Point: 8.3193

>NTDB_id=146252 AA973_RS00205 WP_064437128.1 36959..37702(+) (comB8) [Helicobacter pylori strain ausabrJ05]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADQSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLVNENKLVYEKRYKIALSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
VPTHRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=146252 AA973_RS00205 WP_064437128.1 36959..37702(+) (comB8) [Helicobacter pylori strain ausabrJ05]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGATATGCAAAGCGTGTTTAGACTGGAAAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTATTTTAGCGATTGTGTTAATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCCATTATCCAAAGAGCGGATCAAAGCATTTCCAGTAA
TGAAGCGCTGGCCCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCAGCTAAACTTGTGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGCGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTCACTCGCTACAGCATCACTGAAATC
GTGCCGACTCATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

95.951

100

0.96

Multiple sequence alignment