Detailed information NTG0146217

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: EE66_RS06395
• Genome accession: NZ_CP011483
• Coordinates: 1306334..1307296 (-)
• Length: 320 a.a.
• NCBI ID: WP_064431378.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain DU15
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1301334..1312296

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EE66_RS08765	-	1301400..1301525 (+)	126	WP_301335548.1	hypothetical protein	-
EE66_RS06375 (EE66_06370)	-	1301626..1302558 (-)	933	WP_015429411.1	GDP-L-fucose synthase	-
EE66_RS06380 (EE66_06375)	gmd	1302551..1303696 (-)	1146	WP_064431376.1	GDP-mannose 4,6-dehydratase	-
EE66_RS06385 (EE66_06380)	-	1303736..1305139 (-)	1404	WP_064431614.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
EE66_RS06390 (EE66_06385)	comB10	1305205..1306341 (-)	1137	WP_064431377.1	DNA type IV secretion system protein ComB10	Machinery gene
EE66_RS06395 (EE66_06390)	comB9	1306334..1307296 (-)	963	WP_064431378.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
EE66_RS06400 (EE66_06395)	comB8	1307296..1308033 (-)	738	WP_064431379.1	virB8 family protein	Machinery gene
EE66_RS06405 (EE66_06400)	comB7	1308030..1308155 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
EE66_RS06410 (EE66_06405)	comB6	1308171..1309226 (-)	1056	WP_064431380.1	P-type conjugative transfer protein TrbL	Machinery gene
EE66_RS06415 (EE66_06410)	-	1309234..1310229 (-)	996	WP_064431381.1	PDZ domain-containing protein	-
EE66_RS06420 (EE66_06415)	-	1310229..1310522 (-)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
EE66_RS06425 (EE66_06420)	panD	1310533..1310883 (-)	351	WP_064431382.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36808.54 Da
• Isoelectric Point: 9.6404

>NTDB_id=146217 EE66_RS06395 WP_064431378.1 1306334..1307296(-) (comB9) [Helicobacter pylori strain DU15]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLLFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKALTNNKPLKEEKEETKEEETIIIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=146217 EE66_RS06395 WP_064431378.1 1306334..1307296(-) (comB9) [Helicobacter pylori strain DU15]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCAAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTACTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCCCTCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACTAAAGAAGAAGAAACCATAATTATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAGCAATTCACCTATTTCAAGTTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGGCTAGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	94.785	100	0.966