Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | EE66_RS06410 | Genome accession | NZ_CP011483 |
| Coordinates | 1308171..1309226 (-) | Length | 351 a.a. |
| NCBI ID | WP_064431380.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain DU15 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1303171..1314226
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EE66_RS06385 (EE66_06380) | - | 1303736..1305139 (-) | 1404 | WP_064431614.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| EE66_RS06390 (EE66_06385) | comB10 | 1305205..1306341 (-) | 1137 | WP_064431377.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| EE66_RS06395 (EE66_06390) | comB9 | 1306334..1307296 (-) | 963 | WP_064431378.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| EE66_RS06400 (EE66_06395) | comB8 | 1307296..1308033 (-) | 738 | WP_064431379.1 | virB8 family protein | Machinery gene |
| EE66_RS06405 (EE66_06400) | comB7 | 1308030..1308155 (-) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| EE66_RS06410 (EE66_06405) | comB6 | 1308171..1309226 (-) | 1056 | WP_064431380.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| EE66_RS06415 (EE66_06410) | - | 1309234..1310229 (-) | 996 | WP_064431381.1 | PDZ domain-containing protein | - |
| EE66_RS06420 (EE66_06415) | - | 1310229..1310522 (-) | 294 | WP_000347916.1 | YbaB/EbfC family nucleoid-associated protein | - |
| EE66_RS06425 (EE66_06420) | panD | 1310533..1310883 (-) | 351 | WP_064431382.1 | aspartate 1-decarboxylase | - |
| EE66_RS06430 (EE66_06425) | - | 1310873..1313098 (-) | 2226 | WP_064431383.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| EE66_RS06435 (EE66_06430) | - | 1313098..1313373 (-) | 276 | WP_000784908.1 | ATP-dependent Clp protease adaptor ClpS | - |
| EE66_RS06440 (EE66_06435) | - | 1313396..1313809 (-) | 414 | WP_001023008.1 | universal stress protein | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39722.66 Da Isoelectric Point: 8.8165
>NTDB_id=146220 EE66_RS06410 WP_064431380.1 1308171..1309226(-) (comB6) [Helicobacter pylori strain DU15]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALVFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTSGSASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALVFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTSGSASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=146220 EE66_RS06410 WP_064431380.1 1308171..1309226(-) (comB6) [Helicobacter pylori strain DU15]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGTGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCATGCACTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTACAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGTTTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGATGCGCATATGCAAGAAAAACAAGACCTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACCCCACCCGCTTCCTCTCCTATTTCTACTTCTACAAGTGGAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGTGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCATGCACTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTACAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGTTTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGATGCGCATATGCAAGAAAAACAAGACCTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACCCCACCCGCTTCCTCTCCTATTTCTACTTCTACAAGTGGAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
96.866 |
100 |
0.969 |