Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | EE66_RS06390 | Genome accession | NZ_CP011483 |
| Coordinates | 1305205..1306341 (-) | Length | 378 a.a. |
| NCBI ID | WP_064431377.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain DU15 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1300205..1311341
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EE66_RS06370 (EE66_06365) | hypE | 1300377..1301375 (+) | 999 | WP_064431375.1 | hydrogenase expression/formation protein HypE | - |
| EE66_RS08765 | - | 1301400..1301525 (+) | 126 | WP_301335548.1 | hypothetical protein | - |
| EE66_RS06375 (EE66_06370) | - | 1301626..1302558 (-) | 933 | WP_015429411.1 | GDP-L-fucose synthase | - |
| EE66_RS06380 (EE66_06375) | gmd | 1302551..1303696 (-) | 1146 | WP_064431376.1 | GDP-mannose 4,6-dehydratase | - |
| EE66_RS06385 (EE66_06380) | - | 1303736..1305139 (-) | 1404 | WP_064431614.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| EE66_RS06390 (EE66_06385) | comB10 | 1305205..1306341 (-) | 1137 | WP_064431377.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| EE66_RS06395 (EE66_06390) | comB9 | 1306334..1307296 (-) | 963 | WP_064431378.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| EE66_RS06400 (EE66_06395) | comB8 | 1307296..1308033 (-) | 738 | WP_064431379.1 | virB8 family protein | Machinery gene |
| EE66_RS06405 (EE66_06400) | comB7 | 1308030..1308155 (-) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| EE66_RS06410 (EE66_06405) | comB6 | 1308171..1309226 (-) | 1056 | WP_064431380.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| EE66_RS06415 (EE66_06410) | - | 1309234..1310229 (-) | 996 | WP_064431381.1 | PDZ domain-containing protein | - |
| EE66_RS06420 (EE66_06415) | - | 1310229..1310522 (-) | 294 | WP_000347916.1 | YbaB/EbfC family nucleoid-associated protein | - |
| EE66_RS06425 (EE66_06420) | panD | 1310533..1310883 (-) | 351 | WP_064431382.1 | aspartate 1-decarboxylase | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42085.63 Da Isoelectric Point: 9.8461
>NTDB_id=146216 EE66_RS06390 WP_064431377.1 1305205..1306341(-) (comB10) [Helicobacter pylori strain DU15]
MNKWIKGALVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTNPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
MNKWIKGALVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTNPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=146216 EE66_RS06390 WP_064431377.1 1305205..1306341(-) (comB10) [Helicobacter pylori strain DU15]
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGATTACACCT
TCACCCAAAACCCACAGCCAACTAATACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACCAACCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTGGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGTCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGATTACACCT
TCACCCAAAACCCACAGCCAACTAATACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACCAACCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTGGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGTCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.503 |
100 |
0.955 |