Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   EE66_RS06400 Genome accession   NZ_CP011483
Coordinates   1307296..1308033 (-) Length   245 a.a.
NCBI ID   WP_064431379.1    Uniprot ID   -
Organism   Helicobacter pylori strain DU15     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1302296..1313033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EE66_RS06380 (EE66_06375) gmd 1302551..1303696 (-) 1146 WP_064431376.1 GDP-mannose 4,6-dehydratase -
  EE66_RS06385 (EE66_06380) - 1303736..1305139 (-) 1404 WP_064431614.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  EE66_RS06390 (EE66_06385) comB10 1305205..1306341 (-) 1137 WP_064431377.1 DNA type IV secretion system protein ComB10 Machinery gene
  EE66_RS06395 (EE66_06390) comB9 1306334..1307296 (-) 963 WP_064431378.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  EE66_RS06400 (EE66_06395) comB8 1307296..1308033 (-) 738 WP_064431379.1 virB8 family protein Machinery gene
  EE66_RS06405 (EE66_06400) comB7 1308030..1308155 (-) 126 WP_001217874.1 hypothetical protein Machinery gene
  EE66_RS06410 (EE66_06405) comB6 1308171..1309226 (-) 1056 WP_064431380.1 P-type conjugative transfer protein TrbL Machinery gene
  EE66_RS06415 (EE66_06410) - 1309234..1310229 (-) 996 WP_064431381.1 PDZ domain-containing protein -
  EE66_RS06420 (EE66_06415) - 1310229..1310522 (-) 294 WP_000347916.1 YbaB/EbfC family nucleoid-associated protein -
  EE66_RS06425 (EE66_06420) panD 1310533..1310883 (-) 351 WP_064431382.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28516.72 Da        Isoelectric Point: 8.9546

>NTDB_id=146218 EE66_RS06400 WP_064431379.1 1307296..1308033(-) (comB8) [Helicobacter pylori strain DU15]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFVALVLAIVLISLLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=146218 EE66_RS06400 WP_064431379.1 1307296..1308033(-) (comB8) [Helicobacter pylori strain DU15]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGGCTGGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTGTCGCTCTTGTTTTAGCGATCGTGTTAATCAGTCTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCAGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTACCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCAGCTAAACTCATGAACGAAAACAAGCTGGTATATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
ACTAATAGAGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.356

100

0.971

Multiple sequence alignment