Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AA650_RS21420 Genome accession   NZ_CP011456
Coordinates   4882737..4883108 (+) Length   123 a.a.
NCBI ID   WP_027404669.1    Uniprot ID   A0A844ID78
Organism   Anabaena sp. WA102 isolate     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4877737..4888108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA650_RS21410 (AA650_21500) hmpF 4878532..4880286 (-) 1755 WP_053540584.1 pilus motility taxis protein HmpF -
  AA650_RS21415 (AA650_21505) - 4881335..4882558 (+) 1224 WP_053540585.1 response regulator -
  AA650_RS21420 (AA650_21510) pilH 4882737..4883108 (+) 372 WP_027404669.1 response regulator Machinery gene
  AA650_RS21425 (AA650_21515) - 4883116..4883649 (+) 534 WP_027404670.1 chemotaxis protein CheW -
  AA650_RS21430 (AA650_21520) - 4883681..4886575 (+) 2895 WP_053540586.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13552.69 Da        Isoelectric Point: 5.1746

>NTDB_id=146144 AA650_RS21420 WP_027404669.1 4882737..4883108(+) (pilH) [Anabaena sp. WA102 isolate]
MSTILIVEDSIAQREMITDLLKASGLKVTHASDGAEALEAIQTTPPDLVVLDIVMPRMNGYELCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRGQG

Nucleotide


Download         Length: 372 bp        

>NTDB_id=146144 AA650_RS21420 WP_027404669.1 4882737..4883108(+) (pilH) [Anabaena sp. WA102 isolate]
ATGAGCACAATTCTCATTGTTGAAGACAGTATTGCCCAGAGGGAGATGATTACAGACCTACTGAAAGCTAGTGGCTTAAA
AGTTACTCATGCCAGCGATGGTGCAGAAGCTTTAGAAGCGATTCAAACCACACCTCCCGATTTGGTGGTTTTGGATATTG
TCATGCCCCGCATGAACGGCTATGAACTCTGCCGACGATTAAAATCTGATCCTAAAACCCAAAATGTTCCTGTTGTCATG
TGTTCTTCTAAAGGTGAAGAATTTGATCGCTATTGGGGAATGAAACAAGGGGCAGATGCTTATATAGCAAAACCTTTCCA
ACCAACTGAATTGGTAGGAACAGTCAAACAACTCCTGCGAGGACAAGGATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A844ID78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

75.207

98.374

0.74
  micA Streptococcus pneumoniae Cp1015

39.167

97.561

0.382
  vicR Streptococcus mutans UA159

38.333

97.561

0.374
  pilG Acinetobacter baumannii strain A118

39.474

92.683

0.366
  pilL-C Synechocystis sp. PCC 6803

37.19

98.374

0.366

Multiple sequence alignment