Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAW51_RS25150 Genome accession   NZ_CP011371
Coordinates   5898440..5900008 (+) Length   522 a.a.
NCBI ID   WP_047196817.1    Uniprot ID   A0A0G3BQL5
Organism   Caldimonas brevitalea strain DSM 7029     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5893440..5905008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAW51_RS25135 (AAW51_5040) gshA 5894740..5896035 (-) 1296 WP_047196814.1 glutamate--cysteine ligase -
  AAW51_RS25140 (AAW51_5041) - 5896336..5897757 (-) 1422 WP_047196815.1 ammonium transporter -
  AAW51_RS25145 (AAW51_5042) - 5897777..5898115 (-) 339 WP_047196816.1 P-II family nitrogen regulator -
  AAW51_RS25150 (AAW51_5043) comM 5898440..5900008 (+) 1569 WP_047196817.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAW51_RS25155 (AAW51_5044) - 5900070..5900249 (-) 180 WP_047196818.1 hypothetical protein -
  AAW51_RS25160 (AAW51_5046) - 5900770..5901417 (+) 648 WP_083438564.1 3-keto-disaccharide hydrolase -
  AAW51_RS28540 (AAW51_5047) - 5901651..5902082 (+) 432 WP_053013894.1 hypothetical protein -
  AAW51_RS25170 (AAW51_5048) - 5902100..5902594 (-) 495 WP_053013895.1 HrpB1 family type III secretion system apparatus protein -
  AAW51_RS28545 (AAW51_5049) - 5902656..5903345 (-) 690 WP_053013896.1 hypothetical protein -
  AAW51_RS25180 (AAW51_5050) - 5903703..5904629 (+) 927 WP_047196819.1 DUF6929 family protein -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 54948.61 Da        Isoelectric Point: 8.4187

>NTDB_id=145190 AAW51_RS25150 WP_047196817.1 5898440..5900008(+) (comM) [Caldimonas brevitalea strain DSM 7029]
MSLAVIRSRALAGLQAPEVTVEVHLANGLPSFTLVGLADTEVKEARERVRAALLNSGLTFPHNKRITVNLAPADLPKESG
RFDLPIALGILVASGQLPPERVADHEFAGELSLAGDLRPVRGALAMSLALHRQGAAHAMVLPWASAEEAALVEPARVYGA
RHLLDVVQALLGENSSSSSINGDGAPGPHGERRQGWQRVRPPAAGGAAPPCPDLRDVKGQSLAKRALEVAAAGGHSVLMV
GPPGSGKSMLAQRFAGLLPPLSTDAALESAALLSLAGGFEPARWRQRVFRSPHHSASSVALVGGGSPPRPGEISLAHHGV
LFLDELPEWSRAALEALREPLESGRITISRAARQSEFPAQFQFIAAMNPCPCGWYGSTQRSCRCSPDVVARYQGRLSGPL
LDRLDLHVEVGALSPAELRATPDGEPSAAVAQRVSAALERQQRRQGVANAQLDSAGVDRHCALGASTADFLCAAAERLGW
SARSYHRVLKLARTVADLAGADTIERAQLAEAIQLRRGLVAG

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=145190 AAW51_RS25150 WP_047196817.1 5898440..5900008(+) (comM) [Caldimonas brevitalea strain DSM 7029]
ATGTCGCTTGCCGTCATCCGCAGCCGCGCGCTCGCCGGTTTGCAGGCACCCGAGGTCACGGTGGAAGTGCACCTGGCCAA
CGGGCTGCCCAGCTTCACCCTGGTGGGGCTGGCCGACACCGAAGTCAAGGAAGCCCGCGAGCGGGTGCGCGCCGCGCTAC
TGAACAGCGGTCTGACGTTTCCGCACAACAAGCGCATCACGGTGAATCTGGCGCCGGCCGACCTGCCCAAGGAATCGGGC
CGCTTCGACCTGCCGATCGCGCTGGGCATCCTGGTGGCCAGCGGCCAGCTGCCGCCTGAGCGCGTGGCCGATCATGAATT
CGCCGGCGAGCTGTCGCTGGCGGGAGACCTGCGGCCGGTGCGCGGCGCGCTGGCCATGAGCCTGGCGCTGCATCGCCAGG
GCGCTGCGCACGCGATGGTGCTGCCCTGGGCGAGTGCGGAGGAAGCGGCGCTGGTCGAGCCGGCCCGGGTCTACGGTGCC
CGGCACCTGCTCGACGTGGTGCAGGCCCTGCTCGGCGAGAACAGCAGCAGCAGCAGCATCAACGGCGACGGCGCGCCCGG
CCCGCACGGCGAGAGGCGCCAGGGCTGGCAGAGAGTGCGCCCCCCTGCCGCGGGCGGCGCGGCCCCACCCTGCCCCGACC
TGCGCGACGTGAAAGGCCAGTCGCTGGCCAAGCGTGCACTGGAAGTCGCCGCCGCCGGAGGCCATAGCGTGCTGATGGTC
GGCCCCCCGGGCAGTGGCAAGTCGATGCTCGCCCAGCGTTTCGCCGGCCTGCTGCCGCCGCTGTCCACCGACGCCGCCCT
CGAATCGGCCGCGCTGCTGAGCCTGGCCGGCGGTTTCGAGCCGGCACGCTGGCGGCAGCGCGTCTTCCGCAGCCCGCACC
ACAGCGCTTCATCGGTGGCACTGGTCGGGGGTGGCTCGCCGCCACGCCCCGGCGAGATCTCGTTGGCCCACCACGGCGTG
CTGTTCCTCGACGAACTGCCGGAATGGTCGCGCGCCGCGCTCGAAGCCTTGCGCGAGCCGCTGGAAAGCGGGCGCATCAC
GATCTCGCGCGCCGCCCGCCAGTCGGAGTTCCCGGCACAGTTCCAGTTCATCGCCGCGATGAACCCCTGCCCTTGTGGCT
GGTACGGCTCGACCCAGCGCAGCTGTCGCTGCAGCCCGGACGTGGTGGCCCGCTACCAAGGCCGGCTCAGCGGCCCGCTG
CTGGACCGCCTCGATCTGCACGTCGAGGTGGGCGCCTTGTCGCCAGCCGAGTTACGCGCCACGCCGGACGGCGAGCCGAG
TGCGGCCGTGGCGCAGCGCGTGTCCGCGGCGCTGGAGCGCCAGCAGCGCCGTCAAGGCGTTGCCAATGCGCAACTCGATT
CGGCCGGCGTCGACCGGCACTGTGCGCTCGGCGCCTCCACGGCCGACTTCCTGTGTGCCGCCGCCGAGCGGCTGGGCTGG
TCGGCGCGCAGCTACCACCGGGTGCTGAAGCTGGCCCGCACCGTGGCGGACCTTGCCGGCGCTGACACCATCGAGCGGGC
GCAGCTGGCCGAAGCGATACAGCTGCGGCGGGGGTTGGTGGCGGGATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(424-516)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(213-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G3BQL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.713

100

0.498
  comM Haemophilus influenzae Rd KW20

50

99.234

0.496
  comM Vibrio campbellii strain DS40M4

49.807

99.234

0.494
  comM Glaesserella parasuis strain SC1401

49.711

99.425

0.494
  comM Legionella pneumophila str. Paris

48.023

100

0.489
  comM Legionella pneumophila strain ERS1305867

48.023

100

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.077

99.617

0.429

Multiple sequence alignment