Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   TVD_RS12895 Genome accession   NZ_CP011367
Coordinates   2772876..2774381 (+) Length   501 a.a.
NCBI ID   WP_047251773.1    Uniprot ID   A0A0G3G765
Organism   Thioalkalivibrio versutus strain D301     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2767876..2779381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TVD_RS12870 (TVD_12870) plsY 2768725..2769342 (+) 618 WP_018168903.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  TVD_RS12875 (TVD_12875) tsaD 2769388..2770410 (-) 1023 WP_019563098.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  TVD_RS12880 (TVD_12880) - 2770487..2771686 (-) 1200 WP_047251979.1 class I SAM-dependent methyltransferase -
  TVD_RS12885 (TVD_12885) - 2771769..2772491 (+) 723 WP_047251980.1 pteridine reductase -
  TVD_RS12890 (TVD_12890) ubiK 2772556..2772816 (+) 261 WP_018145076.1 ubiquinone biosynthesis accessory factor UbiK -
  TVD_RS12895 (TVD_12895) comM 2772876..2774381 (+) 1506 WP_047251773.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  TVD_RS12900 (TVD_12900) - 2774455..2775327 (-) 873 WP_047251774.1 c-type cytochrome -
  TVD_RS12910 (TVD_12910) rfaH 2775766..2776317 (-) 552 WP_052772681.1 transcription/translation regulatory transformer protein RfaH -
  TVD_RS15010 - 2776492..2776626 (+) 135 WP_018937428.1 hypothetical protein -
  TVD_RS12915 (TVD_12915) - 2776725..2777663 (-) 939 WP_047251775.1 dimethyl sulfoxide reductase anchor subunit family protein -
  TVD_RS12920 (TVD_12920) - 2777690..2778385 (-) 696 WP_038032074.1 4Fe-4S dicluster domain-containing protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 53335.67 Da        Isoelectric Point: 7.6599

>NTDB_id=145172 TVD_RS12895 WP_047251773.1 2772876..2774381(+) (comM) [Thioalkalivibrio versutus strain D301]
MPVTIAYARAIDGIHAPLVTIETHLANGLPAFQIVGLPEAAVRESRDRVRAAIQTSGFEFPRRRITVNLAPADLPKDGGR
FDLGIALGILAASQQIPAAALARHEFLGELGLDGTLRPVGGTLAAGLAAADAERALVVNPEDGAEAALASRARVLTGSHL
SAVCAALAGHEALVPAQPPEPSAPAHPDLADVRGQHQARRALEIAAAGGHHLLMVGPPGSGKSMLAARIPGILPPMDEAE
ALETAAIHSLRGSSHLRQDWRARPFRSPHHTASGVALVGGGSTPRPGEISLAHQGVLFLDELTEFSRSVLDVLREPLESG
VIHISRAARQAEFPARFQLVGAMNPCPQGFDCDLAERCECTPEQRARHRKRLSAPLLDRIDLAIEVPRIPPGDLAGSADA
SEDSASVAKRVARARKVQRERQNGLNSALDGSALDRYAVLGTADRELLDKAAERFRLSARAYHRILRVARSIADLNDAKA
IATQHLTEALSYRALDHWRTQ

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=145172 TVD_RS12895 WP_047251773.1 2772876..2774381(+) (comM) [Thioalkalivibrio versutus strain D301]
ATGCCCGTCACCATCGCCTACGCCCGCGCCATCGACGGCATCCACGCCCCGCTGGTCACCATCGAGACCCACCTGGCCAA
CGGGCTGCCGGCCTTCCAGATCGTCGGCCTGCCCGAGGCGGCGGTGCGCGAAAGCCGTGACCGCGTGCGCGCGGCGATCC
AGACCAGCGGCTTCGAATTCCCCCGGCGCCGCATCACCGTCAACCTGGCCCCTGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGATCTCGGCATTGCGCTGGGCATCCTGGCCGCCAGCCAGCAGATCCCGGCCGCAGCGCTGGCCCGGCACGAGTTCCT
CGGCGAGCTGGGGCTGGACGGCACCTTGCGCCCGGTGGGTGGCACCCTGGCTGCCGGACTTGCGGCAGCCGACGCCGAGC
GGGCGCTGGTGGTAAACCCGGAGGATGGGGCGGAGGCGGCCCTCGCCAGCCGCGCCCGGGTCCTCACCGGGTCGCACCTG
AGCGCCGTCTGCGCCGCGCTGGCGGGGCACGAGGCCCTGGTGCCGGCACAACCGCCCGAGCCGTCCGCACCCGCGCACCC
CGACCTCGCCGACGTGCGCGGCCAGCACCAGGCGCGCCGGGCTCTGGAGATCGCCGCCGCCGGCGGGCATCACCTGCTGA
TGGTCGGCCCACCCGGGAGCGGCAAATCCATGCTGGCCGCGCGCATCCCCGGCATCCTGCCGCCAATGGACGAGGCCGAA
GCCCTGGAGACCGCGGCCATCCACAGCCTGCGCGGCAGTTCGCACCTGCGCCAGGACTGGCGCGCGCGTCCGTTTCGGTC
CCCGCACCACACCGCCTCGGGCGTCGCGCTGGTCGGTGGCGGCAGTACACCACGCCCCGGCGAGATCTCGCTCGCGCACC
AGGGCGTATTGTTCCTCGACGAACTCACCGAATTCAGCCGCTCGGTGCTCGACGTACTGCGCGAACCGCTGGAGAGTGGC
GTCATCCACATCTCGCGCGCGGCCCGCCAGGCCGAGTTTCCGGCCCGCTTCCAGCTGGTCGGTGCGATGAACCCCTGCCC
ACAGGGCTTCGATTGCGACCTCGCCGAACGCTGCGAATGCACCCCGGAGCAGCGGGCCCGCCACCGCAAGCGCCTTTCCG
CACCGTTACTCGACCGGATTGACCTGGCCATCGAGGTCCCGCGCATCCCACCCGGGGACCTGGCCGGATCGGCCGACGCA
TCCGAAGACTCGGCCTCCGTGGCGAAACGCGTCGCGCGGGCCCGCAAGGTGCAGCGCGAGCGCCAGAACGGACTGAACAG
CGCACTCGATGGCTCAGCCCTGGACCGGTACGCCGTCCTCGGCACGGCTGACCGGGAGCTGCTGGACAAGGCTGCGGAAC
GCTTCCGCCTCTCCGCGCGGGCCTACCACCGCATCCTGCGGGTGGCGCGCTCCATTGCCGATCTCAACGACGCCAAGGCG
ATCGCGACCCAGCACCTGACCGAAGCTCTGAGCTATCGCGCCCTGGACCACTGGCGCACGCAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-138)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G3G765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.883

100

0.531
  comM Vibrio campbellii strain DS40M4

51.69

100

0.519
  comM Haemophilus influenzae Rd KW20

50.898

100

0.509
  comM Glaesserella parasuis strain SC1401

50.398

100

0.505
  comM Legionella pneumophila str. Paris

48.703

100

0.487
  comM Legionella pneumophila strain ERS1305867

48.703

100

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.026

100

0.437

Multiple sequence alignment