Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   AXF35_RS06565 Genome accession   NZ_CP014255
Coordinates   1408548..1409147 (+) Length   199 a.a.
NCBI ID   WP_027221486.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pascullei strain F-4185     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1403548..1414147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXF35_RS06540 (AXF35_10285) - 1403889..1404632 (+) 744 WP_027221481.1 peptidoglycan DD-metalloendopeptidase family protein -
  AXF35_RS06545 (AXF35_10280) rpoS 1404718..1405743 (+) 1026 WP_027221482.1 RNA polymerase sigma factor RpoS Regulator
  AXF35_RS06550 (AXF35_10275) hmgA 1405886..1407136 (-) 1251 WP_027221483.1 homogentisate 1,2-dioxygenase -
  AXF35_RS06555 (AXF35_10270) - 1407284..1408027 (+) 744 WP_027221484.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AXF35_RS06560 (AXF35_10265) ruvC 1408027..1408551 (+) 525 WP_027221485.1 crossover junction endodeoxyribonuclease RuvC -
  AXF35_RS06565 (AXF35_10260) ruvA 1408548..1409147 (+) 600 WP_027221486.1 Holliday junction branch migration protein RuvA Machinery gene
  AXF35_RS06570 (AXF35_10255) - 1409208..1409513 (+) 306 WP_231955182.1 hypothetical protein -
  AXF35_RS06575 (AXF35_10250) lem8 1409601..1411160 (-) 1560 WP_027221487.1 Dot/Icm T4SS effector Lem8 -
  AXF35_RS06580 (AXF35_10245) - 1411680..1413095 (-) 1416 WP_027221488.1 ATP-binding protein -
  AXF35_RS06585 (AXF35_10240) ciaR 1413092..1413769 (-) 678 WP_011213604.1 response regulator Regulator

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22098.35 Da        Isoelectric Point: 6.4932

>NTDB_id=144870 AXF35_RS06565 WP_027221486.1 1408548..1409147(+) (ruvA) [Legionella pneumophila subsp. pascullei strain F-4185]
MIGWLHGQIVDRHQPGKLVLDVNGVGYDVETSLNTFFQIENDNQPVGLHIHTIVREDALLLYGFLDKEERSLFRALIKVN
GIGPKLAMAILSSISPKEFIQCIHQENAALLTKLPGIGKKTAERLVIEMRDSIKQFDGTISDTLQKQAGSAHSQEEAISA
LEALGYKPQEAWKAVNKIDNGNKSCEQLIREALQILSSR

Nucleotide


Download         Length: 600 bp        

>NTDB_id=144870 AXF35_RS06565 WP_027221486.1 1408548..1409147(+) (ruvA) [Legionella pneumophila subsp. pascullei strain F-4185]
ATGATAGGTTGGCTCCATGGTCAAATTGTAGATAGGCATCAGCCAGGAAAATTGGTTCTTGATGTCAATGGAGTGGGATA
TGATGTAGAAACCTCTTTGAATACTTTTTTCCAGATAGAAAATGATAATCAGCCTGTTGGATTACATATTCACACGATAG
TTCGAGAAGATGCCTTATTATTGTATGGCTTCTTAGATAAAGAGGAGCGCTCGTTATTCAGAGCATTAATTAAAGTGAAT
GGGATCGGCCCCAAACTGGCTATGGCTATTTTATCAAGTATTTCTCCTAAGGAATTTATTCAGTGCATTCACCAGGAAAA
CGCTGCTTTGTTAACCAAGTTACCTGGTATAGGTAAGAAAACTGCAGAACGATTGGTAATTGAGATGAGAGACAGTATCA
AGCAATTTGATGGAACGATTTCTGATACTCTCCAAAAACAGGCAGGTAGTGCTCATAGTCAAGAAGAGGCGATCAGCGCG
TTGGAAGCATTAGGTTATAAGCCACAAGAGGCGTGGAAAGCTGTAAATAAAATTGATAATGGCAATAAGAGTTGTGAGCA
GTTGATCCGTGAGGCTTTGCAAATTCTTTCTTCGCGATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(73-131)

RuvA, C-terminal domain (RuvA_C)

(154-197)

RuvA N terminal domain (RuvA_N)

(1-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

35.784

100

0.367
  ruvA Streptococcus pneumoniae TIGR4

36.364

99.497

0.362
  ruvA Streptococcus pneumoniae R6

36.364

99.497

0.362
  ruvA Streptococcus pneumoniae D39

36.364

99.497

0.362