Detailed information NTG0144869

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AXF35_RS06545
• Genome accession: NZ_CP014255
• Coordinates: 1404718..1405743 (+)
• Length: 341 a.a.
• NCBI ID: WP_027221482.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. pascullei strain F-4185
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1399718..1410743

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AXF35_RS06515 (AXF35_10310)	-	1400148..1400465 (+)	318	WP_027221476.1	DUF2845 domain-containing protein	-
AXF35_RS06520 (AXF35_10305)	-	1400502..1400873 (+)	372	WP_027221477.1	protease inhibitor I42 family protein	-
AXF35_RS06525 (AXF35_10300)	-	1400928..1402646 (-)	1719	WP_027221478.1	NAD-dependent malic enzyme	-
AXF35_RS06530 (AXF35_10295)	-	1402726..1403109 (+)	384	WP_027221479.1	hypothetical protein	-
AXF35_RS06535 (AXF35_10290)	surE	1403112..1403870 (+)	759	WP_027221480.1	5'/3'-nucleotidase SurE	-
AXF35_RS06540 (AXF35_10285)	-	1403889..1404632 (+)	744	WP_027221481.1	peptidoglycan DD-metalloendopeptidase family protein	-
AXF35_RS06545 (AXF35_10280)	rpoS	1404718..1405743 (+)	1026	WP_027221482.1	RNA polymerase sigma factor RpoS	Regulator
AXF35_RS06550 (AXF35_10275)	hmgA	1405886..1407136 (-)	1251	WP_027221483.1	homogentisate 1,2-dioxygenase	-
AXF35_RS06555 (AXF35_10270)	-	1407284..1408027 (+)	744	WP_027221484.1	YebC/PmpR family DNA-binding transcriptional regulator	-
AXF35_RS06560 (AXF35_10265)	ruvC	1408027..1408551 (+)	525	WP_027221485.1	crossover junction endodeoxyribonuclease RuvC	-
AXF35_RS06565 (AXF35_10260)	ruvA	1408548..1409147 (+)	600	WP_027221486.1	Holliday junction branch migration protein RuvA	Machinery gene
AXF35_RS06570 (AXF35_10255)	-	1409208..1409513 (+)	306	WP_231955182.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39447.72 Da
• Isoelectric Point: 4.3759

>NTDB_id=144869 AXF35_RS06545 WP_027221482.1 1404718..1405743(+) (rpoS) [Legionella pneumophila subsp. pascullei strain F-4185]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDVEPDIEKIEEELDEFPEFVDEEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=144869 AXF35_RS06545 WP_027221482.1 1404718..1405743(+) (rpoS) [Legionella pneumophila subsp. pascullei strain F-4185]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGATTCTCTGCT
GTCAGAAGAAGATGTTGAACCAGATATCGAAAAAATTGAAGAAGAGCTTGATGAGTTTCCAGAGTTTGTTGATGAGGAAG
CTTTTCCTTCATTCCAACGCGGGAAAAATATTGCCAAGGCTTTAGATGCTACTCAACTTTACCTGGGTGAAATTGGTTTT
TCTCCATTGCTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTGAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAACTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTTGATCTAATCG
AAGAGGGAAACCTGGGTTTAATGAAATCTGTTGAGAAATTTGATCCCAAGCGAGGATTCCGTTTTTCAACTTATGCTACC
TGGTGGATTAGGCAAACTATAGAACGTGCTATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTGGTGAAAGA
ACTCAATGTTTATCTTAGAGCAGCAAGACAATTAACGCAAAAACTGGATCATGAGCCCTCTCCTGAAGAAATAGCAGAAA
TGGTTGATAAACCTTTGGAGGATGTTCAAAAATTATTGGGCTTGAATGATAAAGTAGCTTCAGTTGATACGCCAATTGGA
TTTGATGAAACCAAATCTTTATTGGATACGATTGCTGATGAAAACAGTTTAAATCCTGCAGAACTATTAACCAATGAGAA
TTTAAGGCAACATATAGAATCTCTTTTGGATAAATTAACTGAGAATCAACAACAGGTTATCGCAAGACGCTTTGGGTTAA
GAGGTTTTGAAAAAGCAACACTTGAGGATGTTGGTAAGGAAATTGATTTGACTCGTGAACGCGTTCGCCAGATTCAGGTT
GAAGCTTTGAAGACACTAAGAACCTTGTTGGAGCGGGTTGGATTAACACAAGAGGATTTATTTTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548