Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   YQ44_RS23605 Genome accession   NZ_CP011319
Coordinates   5453932..5455452 (+) Length   506 a.a.
NCBI ID   WP_071325463.1    Uniprot ID   A0A1I9Y2P9
Organism   Janthinobacterium sp. 1_2014MBL_MicDiv     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5448932..5460452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YQ44_RS23580 (YQ44_23605) gshA 5449001..5450299 (-) 1299 WP_070222828.1 glutamate--cysteine ligase -
  YQ44_RS23585 (YQ44_23610) amt 5450634..5452175 (-) 1542 WP_071325461.1 ammonium transporter -
  YQ44_RS23590 (YQ44_23615) - 5452187..5452525 (-) 339 WP_010393464.1 P-II family nitrogen regulator -
  YQ44_RS23595 (YQ44_23620) - 5452537..5453301 (-) 765 WP_071325462.1 TorF family putative porin -
  YQ44_RS23600 (YQ44_23625) - 5453572..5453820 (+) 249 WP_035824443.1 accessory factor UbiK family protein -
  YQ44_RS23605 (YQ44_23630) comM 5453932..5455452 (+) 1521 WP_071325463.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  YQ44_RS23610 (YQ44_23635) - 5455530..5456075 (+) 546 WP_071325464.1 hypothetical protein -
  YQ44_RS23615 (YQ44_23640) - 5456256..5456600 (+) 345 WP_071325465.1 DUF1840 domain-containing protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54604.70 Da        Isoelectric Point: 8.3400

>NTDB_id=144466 YQ44_RS23605 WP_071325463.1 5453932..5455452(+) (comM) [Janthinobacterium sp. 1_2014MBL_MicDiv]
MSLAVLKSRALAGMEAPEVSVEVHLANGLPSFTIVGLPDTEVKESRDRVRAALQNCGFDMPARRITANLAPADLPKESGR
FDLPIALGILAASGQLPGDQLHHYEFAGELSLSGQLRPIRGALAMTFAMQRDKTGVPRAFILPHANADEAALVRDAGIYP
AHTLLEVCAHFAARASHTPLQRHQPMPAAPAFLYPDFADVQGQQQARRALEVAAAGGHNVLMVGPPGAGKTMLASRFPGM
LPPMSDEEALESAAVHSLGGNFKVEHWKRRPYRAPHQTASGVALVGGGNVPRPGEISLAHCGVLFLDEIAEFDRKVLDVL
RQPMESGVITISRAARQADFPARFQLIAAMNPCPCGYLGHASGRCRCTPDAVLRYHGRLSGPLLDRIDLQIEVAAMPPAS
LGRQAGAGEGTQQIATRVAAASALQLARQGKLNQRLNNVEIEQHCQLEQHGERLLHSAMLHLHWSARTYHRVLRVARSIA
DLAGSPVIEQAHVAEAIQYRRVLREI

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=144466 YQ44_RS23605 WP_071325463.1 5453932..5455452(+) (comM) [Janthinobacterium sp. 1_2014MBL_MicDiv]
ATGAGTCTGGCAGTCCTGAAAAGCCGTGCCCTGGCCGGCATGGAAGCGCCCGAGGTAAGTGTCGAAGTCCATCTTGCCAA
TGGCTTGCCGTCCTTTACGATCGTCGGCTTGCCGGATACGGAAGTGAAGGAATCGCGCGACCGCGTACGTGCCGCGCTGC
AAAACTGCGGTTTTGACATGCCGGCGCGGCGCATCACGGCCAACCTGGCCCCGGCGGATCTGCCCAAGGAATCGGGCCGT
TTCGACCTGCCCATCGCGCTAGGCATTCTGGCCGCCTCCGGCCAATTGCCGGGCGACCAATTACACCACTATGAATTCGC
TGGCGAACTGTCGCTGTCAGGACAGCTACGTCCCATCCGGGGCGCGCTGGCCATGACGTTTGCCATGCAACGCGACAAGA
CCGGCGTGCCGCGCGCCTTCATCTTGCCGCACGCGAACGCGGACGAGGCGGCGCTCGTCCGCGATGCCGGCATCTACCCA
GCCCACACCCTGCTCGAGGTATGCGCGCATTTTGCCGCGCGCGCCAGCCATACGCCCCTGCAGCGCCACCAGCCCATGCC
GGCTGCACCCGCTTTCCTGTATCCGGACTTTGCCGATGTGCAGGGACAACAGCAAGCGCGGCGCGCGCTGGAAGTGGCTG
CCGCTGGCGGCCACAACGTCCTGATGGTGGGTCCGCCTGGTGCAGGCAAGACCATGCTGGCCAGCCGTTTTCCCGGCATG
CTGCCACCGATGAGCGACGAAGAGGCGCTGGAATCGGCCGCCGTGCATTCGCTGGGCGGCAATTTTAAAGTGGAACACTG
GAAACGGCGCCCCTATCGTGCGCCCCATCAGACGGCTTCCGGCGTGGCCTTGGTGGGCGGAGGCAATGTTCCGCGGCCCG
GCGAAATTTCGCTGGCGCACTGCGGCGTGCTCTTCCTCGATGAAATTGCCGAATTCGACCGCAAAGTGCTCGACGTGCTG
CGCCAGCCCATGGAATCGGGCGTCATCACCATTTCGCGCGCGGCCCGCCAAGCCGATTTTCCCGCCCGCTTCCAGCTGAT
CGCCGCCATGAACCCGTGTCCCTGCGGTTATCTGGGCCACGCATCCGGCCGCTGCCGGTGCACGCCGGACGCTGTGCTGC
GCTACCACGGCCGCTTGTCCGGACCGCTACTCGACCGTATCGACTTGCAGATTGAAGTGGCGGCCATGCCGCCGGCGTCG
CTGGGCAGGCAAGCCGGTGCTGGCGAAGGCACGCAACAAATCGCCACGCGCGTGGCGGCGGCGTCGGCCCTGCAATTGGC
GCGCCAGGGCAAATTGAACCAGCGGCTGAACAACGTGGAAATCGAACAGCATTGCCAGCTGGAACAACATGGCGAGCGGC
TGCTGCACAGTGCCATGTTGCACCTGCACTGGTCGGCACGCACTTATCACCGGGTGCTGCGCGTGGCCCGCAGCATCGCC
GACCTGGCAGGCAGTCCAGTCATCGAACAAGCACATGTGGCCGAAGCGATCCAGTACCGGCGCGTGCTGCGTGAAATATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(196-397)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-500)

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I9Y2P9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.118

100

0.545
  comM Vibrio cholerae strain A1552

52.838

100

0.534
  comM Glaesserella parasuis strain SC1401

52.756

100

0.53
  comM Haemophilus influenzae Rd KW20

52.362

100

0.526
  comM Legionella pneumophila str. Paris

48.35

100

0.492
  comM Legionella pneumophila strain ERS1305867

48.35

100

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.664

100

0.447

Multiple sequence alignment