Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   XW81_RS02515 Genome accession   NZ_CP011299
Coordinates   543719..544228 (-) Length   169 a.a.
NCBI ID   WP_075474369.1    Uniprot ID   A0A172WE44
Organism   Buchnera aphidicola (Schlechtendalia chinensis) strain SC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 538719..549228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XW81_RS02495 (XW81_02485) deoD 539329..540036 (-) 708 WP_075474365.1 purine-nucleoside phosphorylase -
  XW81_RS02500 (XW81_02490) - 540084..541316 (-) 1233 WP_075474366.1 phosphopentomutase -
  XW81_RS02505 (XW81_02495) - 542014..542589 (-) 576 WP_075474367.1 NfuA family Fe-S biogenesis protein -
  XW81_RS02510 (XW81_02500) bioH 542854..543630 (+) 777 WP_075474368.1 pimeloyl-ACP methyl ester esterase BioH -
  XW81_RS02515 (XW81_02505) ssb 543719..544228 (-) 510 WP_075474369.1 single-stranded DNA-binding protein Machinery gene
  XW81_RS02520 (XW81_02510) dusA 544469..545422 (+) 954 WP_075474370.1 tRNA dihydrouridine(20/20a) synthase DusA -
  XW81_RS02525 (XW81_02515) dnaB 545630..547024 (+) 1395 WP_154017313.1 replicative DNA helicase -
  XW81_RS02530 (XW81_02520) gshB 547388..548347 (+) 960 WP_075474372.1 glutathione synthase -
  XW81_RS02540 (XW81_02530) ruvX 548568..548978 (+) 411 WP_075474374.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 19227.61 Da        Isoelectric Point: 6.3433

>NTDB_id=144317 XW81_RS02515 WP_075474369.1 543719..544228(-) (ssb) [Buchnera aphidicola (Schlechtendalia chinensis) strain SC]
MASRGVNKVILIGYVGQDPEIRYMQNGIAVTNITLATSENWKDKNTGEIREKTEWHKIVFFNKLAEIAGEYLKKGSQVYV
EGSLQTRKWQDQNGIDRYVTEIIVGVGGTMQMLGSRNVNHQSSPLVKSKNHVYESEKSVLKVHEDRDNSKKNLAVHSDDL
EFDDEDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=144317 XW81_RS02515 WP_075474369.1 543719..544228(-) (ssb) [Buchnera aphidicola (Schlechtendalia chinensis) strain SC]
ATGGCTAGTAGAGGGGTAAATAAAGTTATCCTTATAGGATATGTGGGTCAGGATCCAGAAATTAGATATATGCAAAACGG
AATAGCAGTGACTAATATTACATTGGCTACGTCTGAAAATTGGAAAGATAAGAATACTGGAGAGATAAGAGAAAAGACGG
AATGGCATAAAATTGTTTTTTTTAATAAGTTAGCAGAAATTGCAGGAGAATATTTAAAAAAAGGATCTCAAGTTTACGTT
GAAGGATCGTTACAAACTAGAAAATGGCAGGATCAAAATGGAATAGACAGATATGTTACAGAGATTATTGTTGGTGTAGG
TGGAACAATGCAAATGTTAGGAAGTAGAAACGTAAACCATCAATCATCTCCTTTAGTAAAATCAAAAAATCACGTTTATG
AATCTGAAAAAAGCGTGTTAAAAGTTCATGAGGATAGAGATAATTCTAAAAAGAATTTAGCTGTTCATTCTGATGATCTA
GAATTTGATGATGAAGACATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172WE44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.933

100

0.568
  ssb Neisseria meningitidis MC58

42.045

100

0.438
  ssb Neisseria gonorrhoeae MS11

42.045

100

0.438
  ssb Glaesserella parasuis strain SC1401

64.286

66.272

0.426

Multiple sequence alignment