Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   XM39_RS20790 Genome accession   NZ_CP011279
Coordinates   4643422..4643937 (+) Length   171 a.a.
NCBI ID   WP_042114364.1    Uniprot ID   -
Organism   Pandoraea apista strain TF80G25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4638422..4648937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XM39_RS20780 (XM39_12035) uvrA 4638881..4641745 (-) 2865 WP_042114361.1 excinuclease ABC subunit UvrA -
  XM39_RS20785 (XM39_12040) - 4642168..4643391 (+) 1224 WP_042114362.1 MFS transporter -
  XM39_RS20790 (XM39_12045) ssb 4643422..4643937 (+) 516 WP_042114364.1 single-stranded DNA-binding protein Machinery gene
  XM39_RS20795 (XM39_12050) - 4644072..4644803 (+) 732 WP_082117761.1 HD domain-containing protein -
  XM39_RS20800 (XM39_12055) - 4644907..4646073 (+) 1167 WP_042114366.1 M20 aminoacylase family protein -
  XM39_RS20805 (XM39_12060) - 4646095..4646832 (-) 738 WP_042114367.1 GntR family transcriptional regulator -
  XM39_RS20810 (XM39_12065) - 4647121..4648575 (+) 1455 WP_042114368.1 2-hydroxymuconic semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 17812.49 Da        Isoelectric Point: 5.3177

>NTDB_id=144171 XM39_RS20790 WP_042114364.1 4643422..4643937(+) (ssb) [Pandoraea apista strain TF80G25]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKQSGEFKEMTEWHRVSFFGRLAEIVNEYLKKGSSVYIEG
RIRTRKYQAQDGTDRYSTEIVADQMQMLGGRGGEGGGGGGGGGGYSRGGGGDEGGGGGGYSRGGGGGGGRQQAPAKQSGG
GFDDMDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=144171 XM39_RS20790 WP_042114364.1 4643422..4643937(+) (ssb) [Pandoraea apista strain TF80G25]
ATGGCATCAGTCAACAAAGTGATCCTGGTCGGTAACCTTGGCGCCGACCCCGAAGTCCGCTATTTGCCAAGCGGCGATGC
GGTCGCGAACATTCGTCTGGCGACGACCGACCGTTACAAGGACAAGCAATCCGGCGAGTTCAAGGAAATGACGGAATGGC
ACCGCGTGTCGTTCTTCGGCCGTCTCGCCGAGATCGTCAACGAGTACCTGAAGAAGGGCTCGTCGGTGTATATCGAAGGC
CGTATCCGCACGCGCAAGTATCAGGCGCAGGACGGCACGGACCGTTACAGCACGGAAATCGTGGCTGACCAGATGCAGAT
GCTGGGTGGCCGTGGCGGTGAAGGTGGCGGTGGCGGCGGCGGTGGCGGTGGCTACTCGCGCGGCGGCGGTGGTGACGAAG
GCGGCGGTGGTGGCGGCTATTCGCGAGGCGGTGGCGGTGGCGGTGGCCGCCAGCAAGCGCCGGCCAAGCAGTCGGGCGGC
GGCTTCGACGACATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.381

100

0.544
  ssb Glaesserella parasuis strain SC1401

47.222

100

0.497
  ssb Neisseria meningitidis MC58

42.938

100

0.444
  ssb Neisseria gonorrhoeae MS11

42.938

100

0.444
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.64

100

0.392

Multiple sequence alignment