Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   XM39_RS20200 Genome accession   NZ_CP011279
Coordinates   4522100..4523653 (-) Length   517 a.a.
NCBI ID   WP_042114237.1    Uniprot ID   A0A5E5P0F8
Organism   Pandoraea apista strain TF80G25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4517100..4528653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XM39_RS20180 (XM39_11435) - 4518515..4519867 (+) 1353 WP_042117781.1 sigma-54-dependent transcriptional regulator -
  XM39_RS20185 (XM39_11440) - 4520134..4520658 (-) 525 WP_042114234.1 TlpA disulfide reductase family protein -
  XM39_RS25620 - 4520715..4521335 (-) 621 WP_224787342.1 thioredoxin -
  XM39_RS20195 (XM39_11450) - 4521555..4522094 (+) 540 WP_042114235.1 hypothetical protein -
  XM39_RS20200 (XM39_11455) comM 4522100..4523653 (-) 1554 WP_042114237.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  XM39_RS20205 (XM39_11460) - 4523948..4524196 (-) 249 WP_042114239.1 accessory factor UbiK family protein -
  XM39_RS20210 (XM39_11465) - 4524592..4525440 (+) 849 WP_042114241.1 TorF family putative porin -
  XM39_RS20215 (XM39_11470) - 4525454..4525792 (+) 339 WP_010804740.1 P-II family nitrogen regulator -
  XM39_RS20220 (XM39_11475) amt 4525818..4527356 (+) 1539 WP_042114242.1 ammonium transporter -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 54278.97 Da        Isoelectric Point: 8.3691

>NTDB_id=144169 XM39_RS20200 WP_042114237.1 4522100..4523653(-) (comM) [Pandoraea apista strain TF80G25]
MSLAVVSSRAITGMAARAVTVEVHLANGLPGLSLVGLPDTEVKESRERVRSALQNSRFEFPARRITVNLAPADLPKASGC
FDLPIALGILAASGQLPEAGLRTHEFAGELSLTGELRAVRGGLAMASAMAAEPSARALVLPAGSAQEAALVEDATVYGAR
TLLDVCAHLAAPDVATPLPRAVVANACAASASYGPTGTRGTDFPVMGDMSDVKGQAHAKRALEVAAAGGHHLLFYGPPGT
GKSMLATRLVGLLPALSKAQAVEAATLASLSAQGFDMRHWGRRPFRAPHHTASSAALVGGGSAPRPGEISLAHRGVLFLD
ELPEFQRRVLEVLREPLELGHVTISRAGGHATFPAAFQLVAAMNPCPCGDLGHPSRSCRCTSDAVARYRGRLSGPLLDRI
DLHVEVPALSAETFAAPASGERSEVVALRVRQARERQLSRQGQLNCGLSGSALETQCALRPDAREVLHRAVTQHHWSART
YHRVLRVARTVADIAGCESIDAHHVGEAVQYREAPPS

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=144169 XM39_RS20200 WP_042114237.1 4522100..4523653(-) (comM) [Pandoraea apista strain TF80G25]
ATGTCATTGGCAGTTGTCAGCAGCCGGGCGATCACGGGAATGGCGGCGCGCGCGGTCACCGTGGAGGTGCATCTGGCCAA
CGGGCTGCCGGGCCTGTCGCTGGTCGGTCTGCCCGATACCGAGGTCAAGGAAAGCCGTGAGCGCGTGCGTTCGGCATTAC
AGAACAGCCGGTTCGAATTCCCCGCGCGGCGCATCACCGTCAATCTGGCCCCGGCCGATTTACCGAAGGCGTCCGGTTGC
TTCGATCTGCCGATTGCACTGGGCATTCTCGCGGCCAGCGGTCAGTTGCCCGAGGCCGGACTGCGCACGCATGAATTTGC
GGGCGAGTTATCGCTCACAGGGGAACTGCGCGCCGTGCGCGGTGGCCTTGCCATGGCGAGCGCCATGGCGGCCGAACCCT
CGGCGCGTGCGCTGGTGCTGCCCGCCGGCAGTGCGCAGGAAGCGGCGCTCGTCGAAGACGCCACGGTCTACGGCGCGCGC
ACGTTGCTCGACGTCTGCGCGCATCTTGCAGCGCCCGACGTCGCAACACCGCTACCACGTGCCGTCGTGGCCAATGCGTG
TGCGGCGTCGGCAAGCTACGGCCCTACGGGCACACGCGGCACCGACTTTCCCGTTATGGGGGACATGAGCGATGTCAAAG
GACAGGCGCACGCCAAACGCGCACTGGAAGTTGCGGCGGCGGGCGGGCACCACCTCCTTTTCTACGGGCCGCCGGGTACA
GGCAAATCGATGCTGGCAACGCGGCTTGTCGGGCTGCTCCCCGCGTTGAGCAAGGCACAGGCCGTCGAGGCTGCCACGCT
GGCCAGTCTGAGTGCGCAGGGCTTCGATATGCGGCATTGGGGCCGGCGACCGTTTCGCGCGCCGCATCACACGGCATCGT
CAGCGGCATTGGTAGGCGGCGGGAGTGCGCCACGCCCCGGCGAAATCAGCCTTGCGCATCGTGGCGTGCTATTTCTCGAT
GAACTGCCCGAATTCCAGCGGCGTGTGCTTGAAGTCCTGCGCGAACCATTGGAACTGGGTCATGTGACGATCTCGCGTGC
AGGGGGTCATGCAACGTTTCCCGCCGCCTTTCAACTCGTGGCCGCCATGAACCCGTGCCCGTGCGGCGATCTCGGACATC
CCTCGCGAAGTTGCCGTTGTACGAGTGATGCGGTGGCGCGCTATCGCGGCCGCCTCTCAGGACCGCTGCTCGACCGTATC
GACTTGCATGTAGAGGTGCCGGCACTGAGCGCCGAGACGTTCGCTGCACCGGCCAGTGGCGAGCGCAGCGAAGTCGTAGC
GCTGCGTGTCAGGCAAGCGAGGGAGCGTCAGCTTTCGCGGCAGGGGCAATTGAACTGCGGCCTGTCAGGCAGCGCACTGG
AAACACAATGCGCGTTACGGCCGGACGCTCGTGAGGTGCTGCATCGGGCCGTGACGCAGCACCATTGGTCCGCACGCACC
TATCACCGTGTCTTGCGCGTGGCGCGCACGGTCGCCGATATTGCGGGTTGTGAATCGATTGACGCTCACCACGTCGGCGA
GGCTGTGCAATATCGAGAAGCACCGCCGTCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(208-412)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(420-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E5P0F8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.072

99.226

0.507
  comM Vibrio campbellii strain DS40M4

49.903

100

0.499
  comM Haemophilus influenzae Rd KW20

49.708

99.226

0.493
  comM Glaesserella parasuis strain SC1401

49.416

99.42

0.491
  comM Legionella pneumophila str. Paris

47.49

100

0.476
  comM Legionella pneumophila strain ERS1305867

47.49

100

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.605

99.807

0.435

Multiple sequence alignment