Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WN53_RS06810 Genome accession   NZ_CP011254
Coordinates   1544308..1545831 (+) Length   507 a.a.
NCBI ID   WP_046808033.1    Uniprot ID   A0A0F7H8F5
Organism   Serratia fonticola strain DSM 4576     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1539308..1550831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN53_RS06790 (WN53_06790) ilvE 1539511..1540437 (-) 927 WP_024482841.1 branched-chain-amino-acid transaminase -
  WN53_RS06795 (WN53_06795) ilvM 1540459..1540716 (-) 258 WP_024482842.1 acetolactate synthase 2 small subunit -
  WN53_RS06800 (WN53_06800) ilvG 1540713..1542359 (-) 1647 WP_024482843.1 acetolactate synthase 2 catalytic subunit -
  WN53_RS27110 ilvL 1542501..1542599 (-) 99 WP_071681478.1 ilv operon leader peptide -
  WN53_RS06805 (WN53_06805) - 1542733..1543965 (-) 1233 WP_024482844.1 MFS transporter -
  WN53_RS06810 (WN53_06810) comM 1544308..1545831 (+) 1524 WP_046808033.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WN53_RS06815 (WN53_06815) - 1545860..1546198 (-) 339 WP_021181829.1 DUF413 domain-containing protein -
  WN53_RS06820 (WN53_06820) hdfR 1546318..1547145 (+) 828 WP_024482845.1 HTH-type transcriptional regulator HdfR -
  WN53_RS06825 (WN53_06825) yjfF 1547150..1548142 (-) 993 WP_024482846.1 galactofuranose ABC transporter, permease protein YjfF -
  WN53_RS06830 (WN53_06830) ytfT 1548139..1549140 (-) 1002 WP_037411225.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  WN53_RS06835 (WN53_06835) ytfR 1549158..1550672 (-) 1515 WP_024482848.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54643.99 Da        Isoelectric Point: 8.5199

>NTDB_id=143945 WN53_RS06810 WP_046808033.1 1544308..1545831(+) (comM) [Serratia fonticola strain DSM 4576]
MSLAVIYTRATIGVQAPSVMVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPADKLAHYEFLGELALSGALRAVHGAIPAAIAAAEAKRELILAAANGKEAGLLPNSTTRVAEHL
LEVCAFLQGKGDLPIAVAPPAAATSTETADLQEVIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLNGLLPPLSD
REALESVAVASLLHHPDETLPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERRVLDALREPLE
SGEIVISRASAKVRFPARVQLIAAMNPSPTGHYQGIHNRTPPQQILRYLGRLSGPFLDRFDLSIEVPLLPPGVLAKQHHA
GESSQQVRQRVLVARERQLARAGKVNALLSNREVDRDCHLPAAEAEFLEKTLSQLGLSVRAWHRILKVARTLADLTGEQQ
IDKRHLSEALSYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=143945 WN53_RS06810 WP_046808033.1 1544308..1545831(+) (comM) [Serratia fonticola strain DSM 4576]
ATGTCACTGGCGGTAATCTATACCCGTGCCACGATCGGCGTGCAGGCGCCTTCGGTCATGGTTGAAGTCCATATCAGCAA
CGGATTACCCGGCCTTACACTGGTCGGCCTGCCGGAAACCACGGTGAAAGAAGCCCGTGACCGGGTGCGCAGCGCACTGA
TCAACAACGGCTTCACCTTTCCGGCCAAACGCATCACCGTCAATCTGGCACCGGCCGATTTGCCTAAGGAAGGGGGGCGC
TATGATTTACCCATTGCGCTGGCCATTCTGGCAGCCTCAGAGCAACTGCCAGCAGATAAGTTGGCGCACTATGAGTTCCT
GGGTGAATTGGCGCTTTCTGGCGCATTGAGGGCTGTACACGGTGCAATTCCGGCGGCAATAGCGGCAGCCGAGGCCAAGC
GTGAGCTGATCCTCGCAGCGGCCAACGGCAAAGAGGCAGGGTTGCTTCCCAACAGCACGACCCGAGTTGCGGAACATTTG
CTGGAGGTTTGCGCTTTTTTGCAAGGTAAGGGGGATCTGCCGATCGCCGTAGCGCCTCCTGCGGCTGCCACGTCAACGGA
AACTGCCGACCTGCAGGAAGTCATTGGCCAAGAGCAGGCAAAGCGAGCGTTGGAAATTGCCGCAGCCGGGGGCCATAACC
TATTGCTGCTTGGCCCCCCGGGCACCGGAAAAACCATGCTGGCCAGCCGCCTCAACGGTTTGCTGCCACCGTTAAGCGAT
CGGGAGGCGCTGGAAAGCGTGGCCGTTGCCAGCTTATTGCATCACCCTGATGAAACCCTGCCATGGCGCCAGCGGCCGTT
TCGCGCCCCGCACCACAGCGCTTCAATGGCTGCCCTGGTTGGGGGCGGCTCCTTGCCGCGGCCAGGGGAAATCTCCATGG
CGCACAACGGCGTGCTGTTTCTGGATGAGTTACCCGAATTTGAACGGAGAGTGTTAGATGCGTTGCGTGAGCCACTGGAA
TCCGGTGAAATCGTCATCTCACGCGCCAGCGCCAAGGTACGCTTCCCTGCCAGGGTGCAGCTGATTGCGGCGATGAACCC
CAGCCCAACCGGGCACTATCAGGGCATACACAACCGTACGCCACCGCAGCAAATCTTGCGCTACCTCGGCAGGCTTTCCG
GCCCCTTCCTCGATCGATTTGATTTGTCGATTGAGGTGCCACTGCTGCCACCAGGCGTACTGGCCAAGCAGCACCATGCG
GGGGAAAGCAGCCAACAGGTTCGTCAGCGGGTGCTGGTGGCGCGCGAACGGCAGCTGGCACGGGCTGGTAAGGTGAATGC
GCTGTTGAGTAACCGCGAGGTGGATCGGGATTGCCATTTGCCTGCAGCGGAAGCGGAGTTTTTGGAGAAAACGCTGAGCC
AACTGGGATTATCGGTTCGAGCCTGGCATCGCATCCTGAAAGTGGCACGCACGCTGGCCGATTTGACGGGGGAACAACAG
ATTGATAAACGCCATCTCAGCGAAGCGCTCAGCTATCGCAGTATGGATCGCCTGCTGCTGCAGCTACACCGCAGCCTGGA
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F7H8F5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

66.403

99.803

0.663
  comM Vibrio cholerae strain A1552

66.534

99.014

0.659
  comM Glaesserella parasuis strain SC1401

64.694

100

0.647
  comM Vibrio campbellii strain DS40M4

64.94

99.014

0.643
  comM Legionella pneumophila str. Paris

50.403

97.83

0.493
  comM Legionella pneumophila strain ERS1305867

50.403

97.83

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.882

100

0.462

Multiple sequence alignment