Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | F384_RS22375 | Genome accession | NZ_CP011132 |
| Coordinates | 4845521..4846048 (+) | Length | 175 a.a. |
| NCBI ID | WP_046493925.1 | Uniprot ID | - |
| Organism | Citrobacter amalonaticus Y19 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4845521..4888598 | 4845521..4846048 | within | 0 |
Gene organization within MGE regions
Location: 4845521..4888598
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F384_RS22375 (F384_22375) | ssb | 4845521..4846048 (+) | 528 | WP_046493925.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| F384_RS22380 (F384_22380) | - | 4846306..4846866 (-) | 561 | WP_003030312.1 | recombinase family protein | - |
| F384_RS22385 (F384_22385) | - | 4847072..4847494 (+) | 423 | WP_003030314.1 | hypothetical protein | - |
| F384_RS30505 | - | 4847592..4847885 (+) | 294 | WP_226991612.1 | hypothetical protein | - |
| F384_RS22390 (F384_22390) | - | 4847887..4848318 (+) | 432 | WP_046493926.1 | tail fiber assembly protein | - |
| F384_RS22395 (F384_22395) | - | 4848290..4848883 (-) | 594 | WP_046493927.1 | tail fiber assembly protein | - |
| F384_RS28125 | - | 4848883..4849770 (-) | 888 | WP_052746974.1 | hypothetical protein | - |
| F384_RS22405 (F384_22405) | - | 4849770..4850342 (-) | 573 | WP_046493928.1 | YmfQ family protein | - |
| F384_RS22410 (F384_22410) | - | 4850339..4851406 (-) | 1068 | WP_046493929.1 | baseplate J/gp47 family protein | - |
| F384_RS22415 (F384_22415) | - | 4851406..4851756 (-) | 351 | WP_046493930.1 | phage GP46 family protein | - |
| F384_RS22420 (F384_22420) | - | 4851848..4852435 (-) | 588 | WP_046493931.1 | phage baseplate assembly protein V | - |
| F384_RS22425 (F384_22425) | - | 4852419..4853645 (-) | 1227 | WP_046493932.1 | phage baseplate assembly protein | - |
| F384_RS22430 (F384_22430) | - | 4853629..4854960 (-) | 1332 | WP_046493933.1 | DNA circularization protein | - |
| F384_RS22435 (F384_22435) | - | 4854957..4857167 (-) | 2211 | WP_046493934.1 | phage tail tape measure protein | - |
| F384_RS30645 | - | 4857171..4857305 (-) | 135 | WP_264371171.1 | hypothetical protein | - |
| F384_RS22440 (F384_22440) | - | 4857302..4857694 (-) | 393 | WP_046493935.1 | hypothetical protein | - |
| F384_RS22445 (F384_22445) | - | 4857695..4858069 (-) | 375 | WP_046493936.1 | hypothetical protein | - |
| F384_RS22450 (F384_22450) | - | 4858083..4859501 (-) | 1419 | WP_046493937.1 | phage tail sheath C-terminal domain-containing protein | - |
| F384_RS22455 (F384_22455) | - | 4859488..4859706 (-) | 219 | WP_046493938.1 | DUF2635 domain-containing protein | - |
| F384_RS22460 (F384_22460) | - | 4859693..4860352 (-) | 660 | WP_046493939.1 | DUF1834 family protein | - |
| F384_RS22465 (F384_22465) | - | 4860352..4860780 (-) | 429 | WP_046493940.1 | gp436 family protein | - |
| F384_RS22470 (F384_22470) | - | 4860784..4861239 (-) | 456 | WP_046493941.1 | HI1506-related protein | - |
| F384_RS22475 (F384_22475) | - | 4861239..4862147 (-) | 909 | WP_046493942.1 | Mu-like prophage major head subunit gpT family protein | - |
| F384_RS22480 (F384_22480) | - | 4862159..4862551 (-) | 393 | WP_046493943.1 | hypothetical protein | - |
| F384_RS22485 (F384_22485) | - | 4862563..4863660 (-) | 1098 | WP_046493944.1 | phage protease | - |
| F384_RS22490 (F384_22490) | - | 4863883..4864425 (-) | 543 | WP_046493945.1 | phage virion morphogenesis protein | - |
| F384_RS22495 (F384_22495) | - | 4864422..4865681 (-) | 1260 | WP_046493946.1 | phage minor head protein | - |
| F384_RS22500 (F384_22500) | - | 4865668..4867245 (-) | 1578 | WP_046493947.1 | DUF935 domain-containing protein | - |
| F384_RS22505 (F384_22505) | terL | 4867249..4868904 (-) | 1656 | WP_046493948.1 | phage terminase large subunit | - |
| F384_RS22510 (F384_22510) | - | 4868909..4869268 (-) | 360 | WP_046493949.1 | hypothetical protein | - |
| F384_RS22515 (F384_22515) | - | 4869265..4869498 (-) | 234 | WP_046493950.1 | hypothetical protein | - |
| F384_RS22520 (F384_22520) | - | 4869491..4869991 (-) | 501 | WP_046493951.1 | DUF1804 family protein | - |
| F384_RS22525 (F384_22525) | - | 4869993..4870277 (-) | 285 | WP_046493952.1 | hypothetical protein | - |
| F384_RS22530 (F384_22530) | - | 4870274..4870516 (-) | 243 | WP_046493953.1 | hypothetical protein | - |
| F384_RS22535 (F384_22535) | - | 4870525..4871157 (-) | 633 | WP_046493954.1 | hypothetical protein | - |
| F384_RS30140 | - | 4871129..4871380 (-) | 252 | WP_080950011.1 | DUF2644 domain-containing protein | - |
| F384_RS22540 (F384_22540) | - | 4871377..4872021 (-) | 645 | WP_046493955.1 | glycoside hydrolase family 19 protein | - |
| F384_RS22545 (F384_22545) | - | 4872100..4872600 (-) | 501 | WP_046493956.1 | hypothetical protein | - |
| F384_RS22550 (F384_22550) | - | 4872613..4873047 (-) | 435 | WP_046493957.1 | Mor transcription activator family protein | - |
| F384_RS22555 (F384_22555) | - | 4872992..4873468 (-) | 477 | WP_046493958.1 | gp16 family protein | - |
| F384_RS30035 (F384_22560) | - | 4873703..4873921 (-) | 219 | WP_052746975.1 | hypothetical protein | - |
| F384_RS22565 (F384_22565) | - | 4873918..4874133 (-) | 216 | WP_046493959.1 | hypothetical protein | - |
| F384_RS22570 (F384_22570) | - | 4874126..4874491 (-) | 366 | WP_046493960.1 | DUF4406 domain-containing protein | - |
| F384_RS22575 (F384_22575) | - | 4874488..4874991 (-) | 504 | WP_052746976.1 | hypothetical protein | - |
| F384_RS22580 (F384_22580) | - | 4874988..4875710 (-) | 723 | WP_046493961.1 | DUF2786 domain-containing protein | - |
| F384_RS28130 | - | 4875715..4876164 (-) | 450 | WP_155404029.1 | hypothetical protein | - |
| F384_RS22590 (F384_22590) | - | 4876242..4876433 (-) | 192 | WP_046493962.1 | hypothetical protein | - |
| F384_RS22595 (F384_22595) | - | 4876414..4876656 (-) | 243 | WP_046493963.1 | ANR family transcriptional regulator | - |
| F384_RS22600 (F384_22600) | - | 4876658..4877302 (-) | 645 | WP_046493964.1 | DUF3164 family protein | - |
| F384_RS22605 (F384_22605) | - | 4877292..4877489 (-) | 198 | WP_046493965.1 | hypothetical protein | - |
| F384_RS22610 (F384_22610) | - | 4877491..4877712 (-) | 222 | WP_052746978.1 | hypothetical protein | - |
| F384_RS22615 (F384_22615) | - | 4877723..4878013 (-) | 291 | WP_046493966.1 | hypothetical protein | - |
| F384_RS22620 (F384_22620) | - | 4878024..4878917 (-) | 894 | WP_046493967.1 | AAA family ATPase | - |
| F384_RS22625 (F384_22625) | - | 4878925..4880979 (-) | 2055 | WP_046493968.1 | Mu transposase C-terminal domain-containing protein | - |
| F384_RS22630 (F384_22630) | - | 4881002..4881271 (-) | 270 | WP_046493969.1 | helix-turn-helix domain-containing protein | - |
| F384_RS22635 (F384_22635) | - | 4881397..4882182 (+) | 786 | WP_226991613.1 | helix-turn-helix transcriptional regulator | - |
| F384_RS22640 (F384_22640) | - | 4882544..4885261 (-) | 2718 | WP_413541461.1 | cation-transporting P-type ATPase | - |
| F384_RS22645 (F384_22645) | - | 4885809..4886090 (-) | 282 | WP_042999048.1 | YjcB family protein | - |
| F384_RS22650 (F384_22650) | - | 4886686..4888272 (+) | 1587 | WP_046493971.1 | EAL domain-containing protein | - |
| F384_RS22655 (F384_22655) | soxS | 4888275..4888598 (-) | 324 | WP_046493972.1 | superoxide response transcriptional regulator SoxS | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 18907.95 Da Isoelectric Point: 5.2456
>NTDB_id=142661 F384_RS22375 WP_046493925.1 4845521..4846048(+) (ssb) [Citrobacter amalonaticus Y19]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGQQQQGSWGQPQQPQGGNQFSGGAQSRPQQQSAPAA
PSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGQQQQGSWGQPQQPQGGNQFSGGAQSRPQQQSAPAA
PSNEPPMDFDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=142661 F384_RS22375 WP_046493925.1 4845521..4846048(+) (ssb) [Citrobacter amalonaticus Y19]
ATGGCCAGCAGAGGCGTAAATAAGGTTATTCTCGTGGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAATGG
TGGCGCTGTCGCCAACATCACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAGATGAAAGAGCAGACGG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTACATT
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTTGAAAAATACACCACGGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGTGGCGGCGCACCGGCTGGTGGTCAGCAGCAGCAGGGCAGTTGGGGTC
AGCCTCAGCAGCCACAGGGCGGTAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCTGCACCGGCAGCG
CCGTCCAATGAACCGCCGATGGATTTTGACGACGATATCCCGTTCTGA
ATGGCCAGCAGAGGCGTAAATAAGGTTATTCTCGTGGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAATGG
TGGCGCTGTCGCCAACATCACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAGATGAAAGAGCAGACGG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTACATT
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTTGAAAAATACACCACGGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGTGGCGGCGCACCGGCTGGTGGTCAGCAGCAGCAGGGCAGTTGGGGTC
AGCCTCAGCAGCCACAGGGCGGTAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCTGCACCGGCAGCG
CCGTCCAATGAACCGCCGATGGATTTTGACGACGATATCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.033 |
100 |
0.766 |
| ssb | Glaesserella parasuis strain SC1401 |
57.609 |
100 |
0.606 |
| ssb | Neisseria meningitidis MC58 |
47.778 |
100 |
0.491 |
| ssb | Neisseria gonorrhoeae MS11 |
47.778 |
100 |
0.491 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.111 |
100 |
0.371 |