Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   F384_RS20475 Genome accession   NZ_CP011132
Coordinates   4435553..4437073 (-) Length   506 a.a.
NCBI ID   WP_046492902.1    Uniprot ID   A0A0F6TXZ8
Organism   Citrobacter amalonaticus Y19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4430553..4442073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F384_RS20465 (F384_20465) hdfR 4434237..4435070 (-) 834 WP_046492900.1 HTH-type transcriptional regulator HdfR -
  F384_RS20470 (F384_20470) maoP 4435190..4435528 (+) 339 WP_012131115.1 macrodomain Ori organization protein MaoP -
  F384_RS20475 (F384_20475) comM 4435553..4437073 (-) 1521 WP_046492902.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  F384_RS29310 ilvL 4437427..4437525 (+) 99 WP_042326053.1 ilv operon leader peptide -
  F384_RS30240 ilvX 4437612..4437662 (+) 51 WP_193388322.1 peptide IlvX -
  F384_RS20480 (F384_20480) ilvG 4437665..4439311 (+) 1647 WP_046492903.1 acetolactate synthase 2 catalytic subunit -
  F384_RS20485 (F384_20485) ilvM 4439308..4439571 (+) 264 WP_046492904.1 acetolactate synthase 2 small subunit -
  F384_RS20490 (F384_20490) ilvE 4439590..4440519 (+) 930 WP_046492905.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54990.92 Da        Isoelectric Point: 8.1395

>NTDB_id=142659 F384_RS20475 WP_046492902.1 4435553..4437073(-) (comM) [Citrobacter amalonaticus Y19]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTLVGLPETTVKEARDRVRSAIINSGYDFPAKKITINLAPADLPKEGGR
YDLPIAVALLVASEQLTTHKLDQYELVGELALTGALRGVPGAISSATEAIRAGRCIIVAKENEEEVGLIDGKGCLIADHL
QAVCAFLEGKHDLSHPGVSDRVACASSDDLSDIIGQEQGKRSLEITAAGGHNLLLVGPPGTGKTMLASRLNGLLPALSNK
EALESAAILSLVNSTSVQKRWKQRPFRAPHHSASLTAMVGGGTFPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRSTPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGILSQPGVKG
ENSFTVKQRVIAAQERQHKRQGKLNAHLQNREIREHCPLADEDAQWLEETLIHLGLSIRAWQRLLKVSRTIADLAQAEHI
SRRHLQEAVSYRAIDRLLAHLQKQLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=142659 F384_RS20475 WP_046492902.1 4435553..4437073(-) (comM) [Citrobacter amalonaticus Y19]
ATGTCACTGTCAATTGTTCATACACGCGCAGCGCTGGGGGTGAATGCACCGGCGATTACCATCGAAGTGCATATCAGTAA
CGGCCTGCCCGGTTTAACACTGGTGGGGTTACCAGAAACAACCGTTAAAGAGGCGCGCGACCGGGTACGCAGCGCGATCA
TTAATAGCGGGTATGACTTTCCCGCAAAGAAAATCACCATCAATCTCGCCCCTGCCGATCTTCCCAAAGAGGGCGGGAGA
TATGATTTACCTATTGCTGTGGCGCTTCTGGTTGCCTCTGAGCAGCTTACAACACATAAACTCGACCAATATGAGTTAGT
GGGTGAATTAGCGCTTACAGGTGCATTACGCGGCGTTCCCGGTGCCATATCCAGTGCAACCGAAGCGATACGAGCGGGAA
GATGCATTATTGTGGCTAAAGAGAATGAAGAAGAGGTCGGATTAATTGATGGCAAGGGATGTCTGATTGCCGATCATCTG
CAAGCCGTCTGTGCCTTCCTGGAAGGAAAGCATGATCTTAGCCATCCCGGAGTCAGCGACAGGGTGGCCTGCGCGTCATC
TGACGATCTCAGCGATATTATTGGTCAGGAGCAAGGAAAACGCAGCCTTGAGATCACCGCCGCGGGCGGGCATAACCTGC
TGTTGGTTGGCCCACCGGGTACAGGAAAAACGATGCTTGCCAGCCGCCTTAATGGCCTGTTACCGGCGTTGAGTAACAAA
GAAGCCCTGGAAAGCGCCGCCATCCTCAGCCTGGTCAACTCAACCAGCGTGCAAAAACGGTGGAAGCAACGACCTTTTCG
CGCACCGCACCACAGCGCATCCCTGACCGCGATGGTTGGTGGCGGTACCTTCCCCGCGCCAGGCGAAATTTCATTGGCGC
ACAACGGAATACTGTTTCTTGATGAGTTGCCTGAGTTTGAACGACGGACATTAGATGCCCTACGTGAACCCATAGAGTCT
GGCCAGATCCACCTTTCGCGCACGCGCGCTAAGATCACCTATCCTGCGCGCTTTCAACTGGTGGCTGCAATGAATCCCAG
TCCTACAGGACACTATCAGGGTAACCATAACCGGAGTACACCTGAACAGACATTACGCTATCTCAGTCGACTCTCTGGCC
CCTTTCTGGACCGCTTTGATCTTTCTCTCGAGATCCCTTTGCCTCCGCCAGGCATACTCAGCCAACCCGGTGTAAAAGGA
GAAAACAGCTTTACGGTTAAACAGCGGGTCATTGCCGCGCAGGAACGTCAGCATAAACGCCAGGGCAAACTGAATGCACA
CCTGCAAAACAGGGAGATACGTGAACACTGTCCGTTAGCGGATGAAGACGCGCAATGGCTTGAGGAGACACTCATCCATC
TTGGGTTGTCTATACGGGCCTGGCAGCGGTTATTGAAGGTCTCAAGGACCATTGCCGATCTTGCGCAAGCCGAACATATT
TCACGACGACACTTGCAGGAAGCAGTCAGCTACCGGGCGATAGATCGACTGCTTGCTCACCTGCAGAAGCAACTGACATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F6TXZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.802

99.802

0.597
  comM Haemophilus influenzae Rd KW20

58.858

100

0.591
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio campbellii strain DS40M4

58.218

99.802

0.581
  comM Legionella pneumophila str. Paris

47.082

98.221

0.462
  comM Legionella pneumophila strain ERS1305867

47.082

98.221

0.462
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.744

99.407

0.425

Multiple sequence alignment