Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LA76x_RS21185 Genome accession   NZ_CP011129
Coordinates   5288821..5290338 (+) Length   505 a.a.
NCBI ID   WP_057919386.1    Uniprot ID   A0A0S2FGU3
Organism   Lysobacter antibioticus strain 76     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5283821..5295338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA76x_RS21155 (LA76x_4642) speE 5283896..5284762 (+) 867 WP_057919382.1 polyamine aminopropyltransferase -
  LA76x_RS21160 (LA76x_4643) - 5284983..5285519 (-) 537 WP_057919383.1 hypothetical protein -
  LA76x_RS21165 (LA76x_4644) - 5285694..5286680 (-) 987 WP_257720592.1 YeiH family protein -
  LA76x_RS21170 (LA76x_4645) - 5286869..5287810 (+) 942 WP_057919384.1 LysR family transcriptional regulator -
  LA76x_RS21175 (LA76x_4646) - 5287931..5288269 (-) 339 WP_031371341.1 P-II family nitrogen regulator -
  LA76x_RS21180 (LA76x_4647) - 5288546..5288812 (+) 267 WP_057919385.1 accessory factor UbiK family protein -
  LA76x_RS21185 (LA76x_4648) comM 5288821..5290338 (+) 1518 WP_057919386.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LA76x_RS21190 (LA76x_4649) - 5290589..5291815 (-) 1227 WP_057919387.1 nuclear transport factor 2 family protein -
  LA76x_RS21195 - 5291841..5292092 (+) 252 WP_082648037.1 hypothetical protein -
  LA76x_RS21200 (LA76x_4652) - 5292089..5294491 (-) 2403 WP_057919389.1 excinuclease ABC subunit UvrA -
  LA76x_RS21205 (LA76x_4653) - 5294669..5294896 (-) 228 WP_057919390.1 hypothetical protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 53383.07 Da        Isoelectric Point: 8.2624

>NTDB_id=142606 LA76x_RS21185 WP_057919386.1 5288821..5290338(+) (comM) [Lysobacter antibioticus strain 76]
MNLALVHSRARSGVRAPAVRVEVHLGGGLPSMSIVGLPEAAVREAKDRVRAAIQCAQFEFPQRRITVNLAPADLPKDGGR
YDLAIALGILAASGQIPLEALNEYEFLGELGLTGELRAIDGVLPAALAVAALGRRLIVPAGNGAEAALASRVEARTGRTL
LEVCAMLCGRADLPQAQAAPLLRVPGLDMRDVRGQAQARRALEIAAAGGHHLLLIGPPGCGKTLLASRLPGLLPEASEEE
ALETAAIASVAGGAHGHGLDPARWRERPFRSPHHTASAVALVGGGADPRPGEISLAHQGVLFLDELPEWERRALEVLREP
LESGVVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDSSGRCRCAGDAIRRYRARISGPLLDRIDLHIEVPRLPSSALRP
DQPSGESSAAIRERVVAARERQLGRSGKTNAQLSQAETTATCGLSQSDHALLERAVDALQLSARSMHRIQRVARTIADLA
ESPQIATAHLTEAIGYRRGDREVAA

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=142606 LA76x_RS21185 WP_057919386.1 5288821..5290338(+) (comM) [Lysobacter antibioticus strain 76]
ATGAACCTGGCACTCGTGCACAGCCGTGCGCGATCGGGCGTCCGTGCGCCCGCGGTCCGGGTCGAGGTCCACCTCGGCGG
CGGCTTGCCGAGCATGTCGATCGTCGGCCTGCCCGAAGCGGCGGTGCGCGAAGCCAAGGACCGCGTCCGTGCCGCGATCC
AATGCGCGCAGTTCGAATTTCCGCAGCGGCGCATCACCGTCAACCTGGCCCCGGCCGATTTGCCCAAGGACGGCGGCCGC
TACGACCTCGCCATCGCCCTGGGCATCCTCGCCGCGAGCGGGCAGATCCCGTTGGAAGCGCTCAACGAGTACGAGTTCCT
CGGCGAACTCGGCCTGACCGGCGAGCTGCGCGCCATCGACGGCGTGCTGCCGGCCGCGCTCGCGGTCGCCGCGCTCGGGC
GCCGCCTGATCGTGCCGGCCGGCAACGGCGCCGAGGCGGCGCTCGCCAGCCGCGTCGAAGCGCGCACCGGGCGTACACTG
CTCGAAGTCTGCGCCATGCTCTGCGGCCGCGCCGACTTGCCGCAGGCCCAGGCTGCGCCCCTGCTGCGCGTGCCCGGCCT
CGACATGCGCGACGTGCGCGGTCAGGCGCAGGCCCGGCGCGCACTCGAAATCGCCGCCGCCGGCGGCCATCACCTGCTGC
TGATCGGCCCGCCGGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGCTTGCTGCCCGAAGCCAGCGAAGAAGAA
GCGCTGGAAACCGCGGCGATCGCTTCGGTCGCCGGCGGCGCGCACGGCCACGGTCTCGACCCTGCGCGCTGGCGCGAACG
CCCGTTCCGCTCGCCGCACCACACCGCCAGTGCCGTCGCCCTGGTCGGCGGCGGCGCCGATCCGCGCCCCGGCGAGATTT
CGCTCGCCCATCAGGGCGTGCTGTTTCTCGACGAACTGCCCGAGTGGGAACGGCGCGCACTGGAAGTCCTGCGCGAGCCG
CTCGAGTCCGGCGTGGTGACGGTGTCGCGCGCGGCGCGCAGCGCCGAGTTCCCGGCGCGCTTCCAACTGGTCGCGGCGAT
GAACCCCTGCCCTTGCGGCTGGGCCGGCGACAGCAGCGGACGCTGCCGTTGCGCCGGCGACGCGATCCGCCGTTACCGCG
CGCGCATTTCCGGCCCGCTACTCGACCGCATCGACCTGCACATCGAGGTGCCGCGCCTGCCCTCTTCGGCGCTGCGCCCC
GACCAACCCAGCGGCGAAAGCAGCGCCGCGATCCGCGAGCGCGTCGTCGCCGCGCGCGAACGCCAGTTGGGGCGCAGCGG
CAAGACCAATGCGCAGCTCAGCCAGGCCGAGACCACCGCGACCTGCGGCCTCAGCCAGTCCGACCATGCCCTGCTCGAAC
GCGCCGTCGATGCCTTGCAACTGTCGGCGCGCTCGATGCACCGCATCCAGCGGGTAGCGCGCACCATCGCCGATCTTGCC
GAGAGCCCGCAGATCGCCACGGCGCATTTGACCGAGGCGATCGGGTATCGGCGTGGCGATCGCGAGGTCGCGGCCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S2FGU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.865

99.604

0.556
  comM Vibrio campbellii strain DS40M4

55.07

99.604

0.549
  comM Glaesserella parasuis strain SC1401

52.446

100

0.531
  comM Haemophilus influenzae Rd KW20

52.778

99.802

0.527
  comM Legionella pneumophila str. Paris

50.598

99.406

0.503
  comM Legionella pneumophila strain ERS1305867

50.598

99.406

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.727

100

0.453

Multiple sequence alignment