Detailed information NTG0142341

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: PCL1606_RS27515
• Genome accession: NZ_CP011110
• Coordinates: 6138774..6139826 (-)
• Length: 350 a.a.
• NCBI ID: WP_045886213.1
• Uniprot ID: A0A0D5Y6W9
• Organism: Pseudomonas chlororaphis strain PCL1606
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6133774..6144826

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCL1606_RS27490 (PCL1606_56330)	aroK	6134476..6134994 (-)	519	WP_044460777.1	shikimate kinase AroK	-
PCL1606_RS27495 (PCL1606_56340)	pilQ	6134999..6137056 (-)	2058	WP_045886204.1	type IV pilus secretin PilQ	Machinery gene
PCL1606_RS27500 (PCL1606_56350)	-	6137070..6137597 (-)	528	WP_045886207.1	pilus assembly protein PilP	-
PCL1606_RS27505 (PCL1606_56360)	-	6137594..6138211 (-)	618	WP_045886208.1	type 4a pilus biogenesis protein PilO	-
PCL1606_RS27510 (PCL1606_56370)	-	6138208..6138774 (-)	567	WP_045886209.1	PilN domain-containing protein	-
PCL1606_RS27515 (PCL1606_56380)	comM	6138774..6139826 (-)	1053	WP_045886213.1	pilus assembly protein PilM	Machinery gene
PCL1606_RS27520 (PCL1606_56390)	-	6140042..6142477 (+)	2436	WP_413814108.1	penicillin-binding protein 1A	-
PCL1606_RS27525 (PCL1606_56410)	-	6142600..6143868 (-)	1269	WP_044460770.1	malic enzyme-like NAD(P)-binding protein	-

Sequence

Protein

• Length: 350 a.a.
• Molecular weight: 37061.57 Da
• Isoelectric Point: 4.8826

>NTDB_id=142341 PCL1606_RS27515 WP_045886213.1 6138774..6139826(-) (comM) [Pseudomonas chlororaphis strain PCL1606]
MLGLFSKKASSLLGIDISSTSVKLVELSRVGQRFQVEACGVEPLPANAVVEKNIVEPEGVGHALSRLLARTRPGVKNAAL
ALAGSAVISKVIEMDAGLSDDDRESQLKVEADQYIPYPLDEAALDFDVLGYSARHPERVDVLLAACRREHIEIREAALEL
VGLTPRVVDLETCALERSFVLAAGPVASGSVALVDIGTTLTTLNVVQAGQIIYSREQLFGGEQLTEQIQRRYGLSKEEAG
LAKKQGGLPDGYAQAVLQPFQEMAVEQVSRSLQLFQASASQHRIGSLLLAGGSAGLPGLASLLQQRLDLPVRIANPFAGM
SLGSKVDAAVLASEAPALMIACGLALRSFD

Nucleotide

• Length: 1053 bp

>NTDB_id=142341 PCL1606_RS27515 WP_045886213.1 6138774..6139826(-) (comM) [Pseudomonas chlororaphis strain PCL1606]
GTGCTAGGACTCTTCAGCAAAAAGGCGAGTTCCCTTCTCGGGATCGATATCAGTTCCACCTCGGTCAAGCTCGTTGAGTT
GAGCCGCGTCGGCCAGCGTTTTCAGGTCGAGGCCTGCGGGGTGGAGCCGTTGCCGGCCAATGCGGTGGTCGAAAAGAACA
TCGTCGAGCCCGAAGGAGTGGGGCATGCCCTGTCCCGCCTGCTGGCCCGGACCCGGCCGGGTGTGAAGAACGCGGCGCTG
GCGCTGGCCGGTTCGGCGGTGATCAGCAAGGTCATCGAGATGGACGCCGGGCTGTCCGACGACGATCGGGAAAGCCAGCT
CAAGGTCGAAGCCGACCAATACATTCCCTACCCACTGGACGAGGCCGCCCTCGATTTCGACGTGCTCGGCTATTCGGCCC
GTCATCCCGAGCGTGTCGACGTGCTGCTGGCGGCCTGTCGCCGGGAGCACATTGAAATTCGCGAGGCGGCACTGGAACTC
GTAGGGCTGACGCCCCGGGTGGTGGACCTGGAGACCTGCGCGCTCGAGCGCTCGTTCGTCCTGGCGGCCGGGCCGGTAGC
GTCGGGCTCTGTGGCGCTGGTCGATATCGGCACCACCCTCACCACCCTGAACGTCGTGCAGGCAGGGCAAATCATCTATT
CCCGCGAGCAGTTGTTCGGCGGCGAACAACTGACCGAGCAGATCCAGCGCCGTTACGGCTTGTCGAAAGAGGAAGCGGGC
CTGGCGAAAAAACAGGGCGGCTTGCCGGACGGCTATGCGCAAGCCGTGCTGCAACCTTTTCAAGAAATGGCGGTTGAGCA
GGTTTCACGTTCGTTGCAGTTGTTCCAGGCGTCGGCTTCGCAGCATCGGATCGGCTCCCTGTTGTTGGCAGGTGGCAGCG
CCGGCCTGCCCGGGCTGGCCTCGCTGCTCCAGCAACGCCTGGACCTGCCGGTACGGATTGCCAATCCCTTCGCCGGCATG
AGCCTGGGCAGCAAGGTCGATGCCGCAGTGCTGGCTAGCGAAGCGCCGGCCCTGATGATTGCCTGCGGATTGGCCCTGAG
GAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-349)

3D structure

• AlphaFold DB: A0A0D5Y6W9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	52.273	100	0.526
pilM	Acinetobacter baumannii D1279779	51.989	100	0.523
comM	Acinetobacter baylyi ADP1	50	100	0.503
pilM	Legionella pneumophila strain ERS1305867	44.915	100	0.454