Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KO116_RS01495 Genome accession   NZ_CP011052
Coordinates   305580..307088 (-) Length   502 a.a.
NCBI ID   WP_035555072.1    Uniprot ID   -
Organism   Halomonas sp. KO116     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 300580..312088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KO116_RS01475 (KO116_00303) - 301189..301635 (+) 447 WP_035555062.1 DUF411 domain-containing protein -
  KO116_RS01480 (KO116_00304) - 301648..302076 (-) 429 WP_035555065.1 PaaI family thioesterase -
  KO116_RS01485 (KO116_00305) - 302187..304367 (-) 2181 WP_035555066.1 malate synthase G -
  KO116_RS01490 (KO116_00306) - 304587..305567 (+) 981 WP_035555069.1 alpha/beta hydrolase -
  KO116_RS01495 (KO116_00307) comM 305580..307088 (-) 1509 WP_035555072.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KO116_RS01500 (KO116_00308) - 307206..308087 (-) 882 WP_035555077.1 ABC transporter substrate-binding protein -
  KO116_RS01505 (KO116_00309) - 308237..310339 (-) 2103 WP_035555080.1 TonB-dependent siderophore receptor -
  KO116_RS01510 (KO116_00310) - 310499..311497 (-) 999 WP_045812038.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 53708.96 Da        Isoelectric Point: 7.7347

>NTDB_id=141827 KO116_RS01495 WP_035555072.1 305580..307088(-) (comM) [Halomonas sp. KO116]
MTLAIVATRAGVGLDAPAVHVEVHLANGLPGLTLVGLPETAVKESRERVRSALVNAGFDFPNTRRITLNLAPADLPKEGG
RFDLPIALGILAASGQMPVEALEGMECAGELALDGKLRAVPGILPFALATRRAKKALIIPRDCADEAALAGDLPVLPADT
LWQVVAHLLDQEKILPHKLSASVKASTPVDDLADVRGQQQARRALEVAAAGGHNLLFAGPPGTGKTMLASRLPGILPPLS
EEDALEVAAVRSVCGLPLEADWGKRPFRQPHHSASAAALVGGGSKPKPGEISLAHHGVLFLDELPEFSRHVLEVLRQPLE
TGTIHLARASHERRYPARFQLVAAMNPCPCGHLGDPRQRCQCTASQIQRYQARLSGPLLDRIDLQVEVPALPPEQLTAQT
QGESSAAVRERVIAARERQMARGALNSQLSGKALEAACDLNDEERAWLAGVLEKLKLSARAYHRVLRVALTLADLQGEPK
PTQPHFIEAIGYRQLDRMLKGA

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=141827 KO116_RS01495 WP_035555072.1 305580..307088(-) (comM) [Halomonas sp. KO116]
ATGACGTTAGCCATTGTAGCCACGCGCGCAGGCGTAGGTTTAGACGCACCAGCGGTGCATGTAGAGGTGCATTTAGCTAA
CGGTTTGCCAGGCCTAACGCTGGTGGGCCTACCGGAAACCGCTGTGAAAGAGAGCCGCGAACGGGTACGCAGTGCGTTGG
TTAACGCAGGCTTTGACTTCCCCAACACCCGGCGTATTACCCTTAACCTTGCTCCTGCTGATCTCCCCAAAGAGGGCGGC
CGTTTTGATTTGCCCATTGCCCTGGGCATTCTCGCCGCTTCTGGGCAAATGCCGGTTGAGGCATTGGAAGGCATGGAATG
CGCTGGTGAGTTGGCCCTAGATGGCAAACTGCGCGCAGTGCCGGGAATACTGCCCTTTGCCCTGGCTACGCGGCGGGCAA
AAAAAGCGCTGATTATTCCCCGCGACTGCGCCGATGAAGCGGCCCTGGCAGGCGACTTACCGGTACTGCCTGCCGACACG
CTATGGCAAGTCGTCGCCCACCTACTCGACCAAGAGAAGATCCTCCCGCACAAGCTCAGTGCCTCGGTTAAGGCCTCTAC
GCCGGTGGATGACCTCGCCGATGTGCGCGGCCAGCAGCAGGCGCGGCGTGCGCTCGAAGTCGCCGCTGCTGGTGGTCATA
ATCTCCTATTCGCAGGCCCACCAGGCACCGGTAAAACCATGCTGGCCAGCCGCCTGCCAGGCATTCTGCCGCCGCTTTCC
GAAGAGGATGCGCTGGAAGTCGCCGCCGTGCGCTCGGTCTGCGGCCTGCCACTGGAAGCTGATTGGGGCAAAAGGCCATT
CCGCCAACCCCATCACAGTGCCAGCGCCGCCGCCCTGGTCGGCGGCGGCTCAAAACCCAAACCCGGCGAGATTTCACTCG
CCCACCACGGCGTGCTGTTTTTAGACGAACTCCCCGAGTTTTCCCGCCATGTATTAGAAGTGCTTCGGCAGCCACTAGAA
ACCGGTACGATCCATTTAGCCCGCGCCAGCCATGAACGCCGTTATCCAGCTCGGTTTCAATTGGTAGCCGCCATGAACCC
TTGCCCCTGCGGCCACTTAGGCGATCCGCGCCAGCGCTGTCAGTGTACCGCCAGCCAAATCCAGCGTTATCAAGCGCGGC
TTTCTGGGCCGCTGCTGGACCGTATCGACCTTCAAGTGGAAGTGCCCGCGCTGCCACCCGAACAGCTTACTGCGCAAACC
CAAGGCGAATCATCAGCAGCGGTGCGTGAGCGAGTAATAGCCGCCCGGGAGCGACAAATGGCCCGCGGCGCGCTGAACAG
CCAGTTAAGTGGTAAAGCCCTGGAAGCCGCCTGCGACCTGAATGATGAAGAACGCGCCTGGCTGGCGGGCGTGCTCGAAA
AGCTCAAGCTTTCTGCCCGCGCCTACCACCGCGTTTTGCGGGTGGCACTTACCCTAGCCGACCTGCAGGGTGAGCCCAAA
CCCACTCAACCGCACTTTATTGAAGCGATTGGCTACCGGCAGTTGGATCGGATGTTGAAGGGAGCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.686

100

0.566
  comM Vibrio cholerae strain A1552

54.871

100

0.55
  comM Glaesserella parasuis strain SC1401

54.241

100

0.548
  comM Vibrio campbellii strain DS40M4

54.076

100

0.542
  comM Legionella pneumophila str. Paris

51.606

99.203

0.512
  comM Legionella pneumophila strain ERS1305867

51.606

99.203

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.479

99.004

0.46

Multiple sequence alignment