Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   BIS30_RS17920 Genome accession   NZ_CP011051
Coordinates   3420160..3420747 (+) Length   195 a.a.
NCBI ID   WP_003218692.1    Uniprot ID   -
Organism   Bacillus spizizenii strain T30     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3415160..3425747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIS30_RS17890 (BIS30_17890) dapD 3415347..3416057 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  BIS30_RS17895 (BIS30_17895) - 3416127..3417251 (+) 1125 WP_003218682.1 N-acetyldiaminopimelate deacetylase -
  BIS30_RS17900 (BIS30_17900) - 3417313..3417558 (+) 246 WP_003218684.1 YkuS family protein -
  BIS30_RS17905 (BIS30_17905) mscT 3417594..3418397 (-) 804 WP_003218686.1 small-conductance mechanosensitive channel protein MscT -
  BIS30_RS17910 (BIS30_17910) ahpA 3418642..3419184 (+) 543 WP_003218688.1 biofilm-specific peroxidase AhpA -
  BIS30_RS17915 (BIS30_17915) ykuV 3419254..3419712 (+) 459 WP_003218690.1 thiol-disulfide oxidoreductase YkuV -
  BIS30_RS17920 (BIS30_17920) rok 3420160..3420747 (+) 588 WP_003218692.1 transcriptional regulator Rok Regulator
  BIS30_RS17925 (BIS30_17925) cse15 3420787..3421752 (-) 966 WP_003218694.1 spore protein Cse15 -
  BIS30_RS17930 (BIS30_17930) - 3421888..3422487 (+) 600 WP_003218697.1 molybdenum cofactor guanylyltransferase -
  BIS30_RS17935 (BIS30_17935) - 3422538..3423557 (+) 1020 WP_003218699.1 MoeB/ThiF family adenylyltransferase -
  BIS30_RS17940 (BIS30_17940) glp 3423575..3424867 (+) 1293 WP_003218701.1 gephyrin-like molybdotransferase Glp -
  BIS30_RS17945 (BIS30_17945) mobB 3424828..3425349 (+) 522 WP_003218703.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22244.23 Da        Isoelectric Point: 9.7036

>NTDB_id=141817 BIS30_RS17920 WP_003218692.1 3420160..3420747(+) (rok) [Bacillus spizizenii strain T30]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEIESTESAESANE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=141817 BIS30_RS17920 WP_003218692.1 3420160..3420747(+) (rok) [Bacillus spizizenii strain T30]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCCGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAG
AAGAAGAGGGACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCCATTAAAACATTAAAACGCCACAACG
CGGCGATTAAGAGTTCCGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATG
CAAAGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCGTATCGCGGCCAGTACATTTTAGAAGGCGAAATTGAATCAAC
TGAATCTGCAGAATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

97.949

100

0.979

Multiple sequence alignment