Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CSK29544_RS03690 Genome accession   NZ_CP011047
Coordinates   787058..788578 (+) Length   506 a.a.
NCBI ID   WP_007892222.1    Uniprot ID   A0A7V7RDZ9
Organism   Cronobacter sakazakii strain ATCC 29544     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 782058..793578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSK29544_RS03675 (CSK29544_00743) - 783619..784548 (-) 930 WP_007892214.1 branched-chain amino acid transaminase -
  CSK29544_RS03680 (CSK29544_00744) ilvM 784569..784826 (-) 258 WP_004387277.1 acetolactate synthase 2 small subunit -
  CSK29544_RS03685 (CSK29544_00745) ilvG 784823..786469 (-) 1647 WP_007892218.1 acetolactate synthase 2 catalytic subunit -
  CSK29544_RS22415 ilvL 786608..786706 (-) 99 WP_071601137.1 ilv operon leader peptide -
  CSK29544_RS03690 (CSK29544_00746) comM 787058..788578 (+) 1521 WP_007892222.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CSK29544_RS03695 (CSK29544_00747) - 788658..788996 (-) 339 WP_004387280.1 DUF413 domain-containing protein -
  CSK29544_RS03700 (CSK29544_00748) hdfR 789104..789937 (+) 834 WP_104669286.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54912.29 Da        Isoelectric Point: 8.2024

>NTDB_id=141725 CSK29544_RS03690 WP_007892222.1 787058..788578(+) (comM) [Cronobacter sakazakii strain ATCC 29544]
MSLSVIHTRAALGVKAPLVTVEVHISAGLPGLTIVGLPETTVKEARDRVRSALINSGYEFPAKKVTINLAPADLPKEGGR
YDLPIAIALLAASEQLSASHLGEYEFVGELALTGALRGVPGAISAAIEALGCKRKIIVAHDNGPEVGLINKEGCLVAQHL
QEVCAFLEGKTQLECAEPSGFKFREPAGDLGEVIGQTQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSDQ
EALESAAILSLVNPVSLHHQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GQIHLSRTRAKLTYPARFQLIAAMNPSPTGHYKGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGMLSQAGQTG
ESSAQVRERVIVSRERQFARQGKLNAMLDNREIRQFCVLSPEDAQWLEAALIKLGLSVRAWQRLLKVARTIADCEQKQRI
SREHLQEALSYRAIDRMLAHLQNMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=141725 CSK29544_RS03690 WP_007892222.1 787058..788578(+) (comM) [Cronobacter sakazakii strain ATCC 29544]
ATGTCGTTATCAGTTATTCATACCCGTGCTGCGCTTGGGGTTAAGGCGCCGCTCGTGACAGTTGAAGTACATATCAGCGC
CGGGCTGCCCGGCCTGACTATTGTCGGCTTACCGGAAACCACCGTTAAAGAAGCCAGAGATCGCGTACGCAGCGCGCTTA
TCAATAGCGGTTATGAATTTCCGGCTAAAAAGGTAACCATCAATCTGGCACCGGCGGATCTACCTAAAGAAGGTGGGCGA
TATGATTTACCTATCGCCATCGCGCTTCTGGCCGCCTCTGAGCAATTGAGCGCATCCCATCTTGGTGAATATGAATTTGT
AGGTGAGCTGGCGCTTACAGGCGCGCTGAGAGGCGTTCCCGGCGCAATTTCAGCCGCCATTGAGGCTCTGGGTTGTAAAA
GGAAAATTATCGTCGCGCATGATAATGGCCCTGAAGTAGGACTCATCAATAAAGAGGGTTGCCTTGTGGCTCAACATCTA
CAGGAGGTCTGCGCCTTCCTGGAAGGAAAAACACAGCTGGAATGCGCTGAGCCATCCGGCTTTAAATTCAGAGAGCCGGC
GGGAGATCTGGGCGAGGTTATCGGTCAAACACAGGGAAAGCGCGCGCTTGAGTTAACCGCAGCGGGTGGGCATAACCTGC
TTTTTATTGGGCCCCCTGGTACAGGTAAAACCATGCTTGCCAGCAGACTCAATGGGTTACTGCCGCCTCTGAGCGACCAG
GAGGCGTTGGAGAGCGCTGCGATACTCAGCCTGGTCAACCCTGTCTCTTTACACCATCAATGGCGTCAGCGTCCATTCAG
GGCCCCTCACCATAGCGCATCGCTTAACGCCATGGTGGGCGGAGGAGCAATTCCTGCGCCAGGAGAGATCTCACTTGCCC
ATAACGGCGTGCTTTTTCTGGATGAATTACCTGAGTTTGAACGTCGCGTACTGGATGCTTTACGCGAGCCGATTGAATCA
GGGCAAATCCATCTTTCACGAACCAGGGCGAAATTAACCTATCCCGCGCGTTTTCAGCTTATTGCTGCCATGAATCCTAG
CCCGACAGGGCACTACAAAGGCAATCACAATCGCTGCTCACCGGAACAAACGCTGCGCTATCTTGGACGGCTTTCCGGGC
CATTTCTAGACAGGTTTGATCTCTCCCTTGAAATCCCGCTTCCCCCGCCGGGTATGCTTAGTCAGGCAGGACAGACCGGT
GAAAGCAGCGCGCAAGTAAGGGAACGAGTCATTGTTAGCAGAGAGCGTCAGTTTGCACGTCAGGGAAAACTCAACGCCAT
GTTGGATAACCGGGAAATACGTCAGTTTTGTGTGCTTAGTCCGGAGGACGCGCAGTGGCTGGAGGCAGCATTAATCAAAC
TGGGGTTGTCGGTTCGCGCCTGGCAGCGTTTACTTAAAGTGGCACGCACAATTGCAGATTGTGAACAGAAACAAAGGATT
AGTCGTGAGCATCTTCAGGAGGCACTGAGCTATCGTGCAATAGACAGGATGCTGGCCCATTTACAGAACATGATGGCGTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7V7RDZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.493

100

0.619
  comM Vibrio cholerae strain A1552

60.558

99.209

0.601
  comM Glaesserella parasuis strain SC1401

59.763

100

0.599
  comM Vibrio campbellii strain DS40M4

59.96

99.209

0.595
  comM Legionella pneumophila str. Paris

47.379

98.024

0.464
  comM Legionella pneumophila strain ERS1305867

47.379

98.024

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.615

100

0.439

Multiple sequence alignment