Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PNIG_RS00675 Genome accession   NZ_CP011036
Coordinates   140067..141578 (+) Length   503 a.a.
NCBI ID   WP_089367560.1    Uniprot ID   -
Organism   Pseudoalteromonas nigrifaciens strain KMM 661     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 135067..146578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNIG_RS00630 (PNIG_a0143) - 135205..135573 (+) 369 WP_011326846.1 YacL family protein -
  PNIG_RS00635 (PNIG_a0144) - 135680..136303 (+) 624 WP_086994344.1 dUTP diphosphatase -
  PNIG_RS00640 (PNIG_a0145) yrfG 136319..136966 (-) 648 WP_011326848.1 GMP/IMP nucleotidase -
  PNIG_RS00645 (PNIG_a0146) nudE 137029..137601 (+) 573 WP_089368921.1 ADP compounds hydrolase NudE -
  PNIG_RS00650 (PNIG_a0147) cysQ 137594..138379 (+) 786 WP_011326850.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PNIG_RS00670 (PNIG_a0148) - 139419..140033 (+) 615 WP_011326851.1 trimeric intracellular cation channel family protein -
  PNIG_RS00675 (PNIG_a0149) comM 140067..141578 (+) 1512 WP_089367560.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PNIG_RS00680 (PNIG_a0150) - 141575..142294 (-) 720 WP_011326853.1 response regulator transcription factor -
  PNIG_RS00685 (PNIG_a0151) - 142524..145025 (-) 2502 WP_089367561.1 prolyl oligopeptidase family serine peptidase -
  PNIG_RS00690 (PNIG_a0152) - 145110..146186 (+) 1077 WP_089367562.1 hemolysin family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55131.33 Da        Isoelectric Point: 7.9408

>NTDB_id=141652 PNIG_RS00675 WP_089367560.1 140067..141578(+) (comM) [Pseudoalteromonas nigrifaciens strain KMM 661]
MSLARIYSRAQVGINAPEVIVEVHLGNGLPAFHIVGLPEASVKESKDRVRSALENSKFGFPDQRITVNLAPADLPKDGGR
FDLAIAVGILVASGQIVCSDIHKYEFYGELALNGEIRGVNAILPSVLAAKEQDRCCFLPLANDSLASLVNGVKRKAVSSI
AEVWGDLLNQQPLPLNIQYPDCTQAPDFLLDLSDVKGQPGAKRVLEIAAAGGHNLLFLGPPGTGKSMLAQRMATIMPTMS
DDEAIATAALYSIIGQSIDLTNWRQRPFRNPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFERKVLDSLREPM
ETGTVTISRAARQMEFPAQFQLITALNPSPTGCHNDKRATPDQVMRYLSRVSGPFIDRIDLQIELPRLTSVELQSSKPEE
TSAVVRARVEAAYYLQLKRQGKVNARLNNKEMSIHCDLASTELQFLARASEKLALSPRSYHRIIKVARTISDLKGAERIS
LNELKEALNYRAFERLLAQLTKY

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=141652 PNIG_RS00675 WP_089367560.1 140067..141578(+) (comM) [Pseudoalteromonas nigrifaciens strain KMM 661]
ATGTCGTTAGCTCGCATATATTCTCGTGCTCAGGTGGGCATAAATGCCCCCGAAGTGATTGTTGAGGTGCATTTAGGTAA
TGGTTTGCCTGCTTTTCATATTGTCGGTTTGCCCGAGGCTTCGGTTAAAGAATCTAAAGACAGAGTGCGTAGCGCACTTG
AAAATTCTAAGTTTGGTTTTCCCGATCAACGTATTACTGTTAATTTAGCCCCTGCCGATTTACCAAAAGACGGTGGCCGA
TTCGATCTTGCTATTGCCGTAGGTATTTTAGTCGCCTCAGGGCAAATAGTGTGCTCTGACATTCATAAATATGAGTTTTA
TGGGGAGCTGGCACTTAACGGTGAGATACGTGGCGTAAATGCTATTTTGCCCTCGGTGCTTGCTGCTAAAGAGCAGGACC
GTTGCTGTTTTTTACCACTGGCAAATGATAGCTTAGCCAGTTTAGTTAACGGGGTTAAACGCAAAGCCGTAAGCTCTATT
GCAGAAGTGTGGGGCGATTTACTTAATCAGCAACCACTGCCGTTAAATATACAATACCCAGATTGTACGCAAGCTCCTGA
TTTTTTGCTTGATTTAAGTGATGTGAAAGGCCAGCCTGGGGCAAAGCGAGTACTCGAAATTGCCGCTGCAGGAGGCCATA
ACTTACTATTTTTAGGACCCCCTGGTACGGGTAAGTCAATGCTGGCTCAACGTATGGCAACCATTATGCCAACCATGTCA
GATGATGAAGCAATTGCTACTGCGGCGCTTTATTCTATTATTGGCCAGTCGATTGATTTAACTAATTGGCGACAACGGCC
ATTTCGCAATCCTCACCATACCTGCTCTGCCGTTGCATTAGTCGGTGGCTCGTCAAACCCTAAACCGGGTGAAATTTCAT
TGGCGCATAATGGCGTGCTTTTTTTAGATGAGTTGCCAGAGTTCGAACGTAAAGTGCTCGATTCGCTGCGTGAACCTATG
GAAACTGGTACTGTCACTATTTCGCGTGCGGCAAGGCAAATGGAGTTTCCGGCGCAGTTTCAGCTTATTACGGCGCTAAA
CCCCAGCCCTACAGGTTGCCATAATGATAAGCGGGCAACGCCTGATCAAGTAATGCGTTATTTGTCGCGTGTTTCGGGGC
CGTTTATTGACCGTATTGACTTACAAATTGAATTACCAAGGCTAACGAGTGTTGAGTTACAAAGTAGCAAACCCGAAGAA
ACCAGTGCAGTAGTAAGAGCGCGAGTAGAGGCTGCTTATTATTTGCAGCTAAAACGCCAAGGTAAAGTGAATGCGCGGTT
AAACAATAAAGAAATGAGTATACATTGTGATCTCGCTTCCACTGAGTTGCAGTTTTTAGCCAGAGCGAGTGAAAAACTGG
CATTATCGCCACGCTCATACCATAGAATAATTAAAGTAGCGCGTACTATTAGTGATTTAAAAGGGGCGGAGCGTATTAGC
TTAAATGAGCTAAAAGAAGCACTTAACTACCGCGCCTTTGAGCGCTTACTAGCGCAATTAACTAAGTACTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.151

100

0.563
  comM Glaesserella parasuis strain SC1401

54.331

100

0.549
  comM Vibrio campbellii strain DS40M4

54.762

100

0.549
  comM Haemophilus influenzae Rd KW20

53.922

100

0.547
  comM Legionella pneumophila str. Paris

49.802

100

0.501
  comM Legionella pneumophila strain ERS1305867

49.802

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.095

100

0.423

Multiple sequence alignment