Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | PTUN_RS03740 | Genome accession | NZ_CP011032 |
| Coordinates | 796069..797199 (+) | Length | 376 a.a. |
| NCBI ID | WP_009838362.1 | Uniprot ID | - |
| Organism | Pseudoalteromonas tunicata strain D2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 791069..802199
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PTUN_RS03710 (PTUN_a0884) | - | 792129..792578 (-) | 450 | WP_009838356.1 | DUF4426 domain-containing protein | - |
| PTUN_RS03715 (PTUN_a0885) | yggU | 792605..792910 (-) | 306 | WP_009838357.1 | DUF167 family protein YggU | - |
| PTUN_RS03720 (PTUN_a0886) | - | 792910..793443 (-) | 534 | WP_009838358.1 | YggT family protein | - |
| PTUN_RS03725 (PTUN_a0887) | proC | 793453..794271 (-) | 819 | WP_009838359.1 | pyrroline-5-carboxylate reductase | - |
| PTUN_RS03730 (PTUN_a0888) | - | 794284..795018 (-) | 735 | WP_009838360.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| PTUN_RS03735 (PTUN_a0889) | pilT | 795017..796066 (+) | 1050 | WP_009838361.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| PTUN_RS03740 (PTUN_a0890) | pilU | 796069..797199 (+) | 1131 | WP_009838362.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| PTUN_RS03745 (PTUN_a0891) | - | 797364..798266 (+) | 903 | WP_009838363.1 | hypothetical protein | - |
| PTUN_RS03750 (PTUN_a0892) | ruvX | 798378..798827 (-) | 450 | WP_009838364.1 | Holliday junction resolvase RuvX | - |
| PTUN_RS03755 (PTUN_a0893) | - | 798859..799416 (-) | 558 | WP_009838365.1 | YqgE/AlgH family protein | - |
| PTUN_RS03760 (PTUN_a0894) | gshB | 799444..800397 (-) | 954 | WP_009838366.1 | glutathione synthase | - |
| PTUN_RS03765 (PTUN_a0895) | rsmE | 800481..801212 (-) | 732 | WP_009838367.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 41748.60 Da Isoelectric Point: 6.5674
>NTDB_id=141613 PTUN_RS03740 WP_009838362.1 796069..797199(+) (pilU) [Pseudoalteromonas tunicata strain D2]
MTNLNFYLSQMLTRGASDLFVSTFMPVSAKINGELTHLDNNSLSEEQALALVESAMSEKQKKEYHDTKECNFAIATEEGR
FRISAFWQRDKAGMVVRRIVSSIPDVNDLGLPPVLTDVIMSKRGLVLFVGGTGTGKSTSLAALIGYRNRNQRGHILTIED
PIEFVHEHQKSIVTQREVGLDTESFESALKSSLRQAPDVILIGEIRSQETMEYALSFAETGHLCVATLHANNANQAIDRI
MHLVPKEKHDKLKYDLALNLRAIVAQQLVPTADGNGRVAAIEVLLNSPMIAELIKKGDIGGIKETMAKSREMGMQTFDQA
LFEHYQRHRINYADALHHADSPNDLRLMIKLRNNEQQGAGFLQGVTIDGLGNDPKN
MTNLNFYLSQMLTRGASDLFVSTFMPVSAKINGELTHLDNNSLSEEQALALVESAMSEKQKKEYHDTKECNFAIATEEGR
FRISAFWQRDKAGMVVRRIVSSIPDVNDLGLPPVLTDVIMSKRGLVLFVGGTGTGKSTSLAALIGYRNRNQRGHILTIED
PIEFVHEHQKSIVTQREVGLDTESFESALKSSLRQAPDVILIGEIRSQETMEYALSFAETGHLCVATLHANNANQAIDRI
MHLVPKEKHDKLKYDLALNLRAIVAQQLVPTADGNGRVAAIEVLLNSPMIAELIKKGDIGGIKETMAKSREMGMQTFDQA
LFEHYQRHRINYADALHHADSPNDLRLMIKLRNNEQQGAGFLQGVTIDGLGNDPKN
Nucleotide
Download Length: 1131 bp
>NTDB_id=141613 PTUN_RS03740 WP_009838362.1 796069..797199(+) (pilU) [Pseudoalteromonas tunicata strain D2]
ATGACTAATTTAAATTTTTATTTAAGCCAAATGCTTACTCGCGGAGCATCCGATTTATTTGTCTCAACCTTTATGCCGGT
CAGTGCCAAAATCAATGGTGAGCTTACGCATTTAGACAATAATAGTTTATCTGAAGAGCAAGCACTTGCTTTAGTTGAAT
CTGCGATGTCAGAAAAGCAGAAAAAAGAGTATCACGATACTAAAGAGTGTAACTTTGCGATTGCCACCGAAGAGGGACGT
TTTCGTATTTCTGCTTTTTGGCAACGTGATAAAGCGGGTATGGTGGTCAGGCGTATTGTGAGTTCTATTCCTGATGTGAA
TGACTTAGGCTTGCCGCCAGTATTAACCGATGTGATCATGTCAAAACGGGGTTTAGTACTGTTTGTTGGTGGTACTGGTA
CAGGTAAATCAACTTCTCTAGCGGCGTTAATTGGTTATCGTAATCGGAATCAACGTGGCCATATTTTAACGATTGAAGAC
CCAATTGAATTTGTTCATGAGCACCAAAAAAGTATTGTTACGCAACGTGAAGTTGGCTTAGATACAGAAAGCTTTGAATC
GGCATTAAAAAGTTCATTACGCCAAGCGCCAGATGTTATCTTAATTGGTGAAATTCGCTCACAAGAAACCATGGAATACG
CATTAAGTTTTGCAGAAACGGGGCATTTATGTGTTGCAACCTTACATGCGAATAACGCTAATCAGGCAATTGACCGGATC
ATGCACTTAGTACCAAAAGAAAAGCACGATAAACTAAAATATGATTTGGCACTCAATTTACGCGCTATTGTTGCTCAGCA
ATTAGTGCCCACAGCTGATGGTAATGGTCGAGTTGCAGCAATTGAAGTACTTCTTAATTCGCCGATGATTGCAGAGCTAA
TTAAAAAAGGCGACATTGGTGGTATTAAAGAAACCATGGCTAAATCGCGCGAAATGGGGATGCAAACATTCGATCAAGCC
TTGTTTGAGCATTATCAGCGCCATCGTATTAATTACGCGGACGCATTACATCATGCTGATTCTCCAAATGATTTAAGGCT
GATGATTAAATTGCGTAACAATGAACAGCAAGGCGCTGGATTCTTACAAGGCGTAACGATAGATGGTTTAGGTAACGATC
CTAAAAATTAG
ATGACTAATTTAAATTTTTATTTAAGCCAAATGCTTACTCGCGGAGCATCCGATTTATTTGTCTCAACCTTTATGCCGGT
CAGTGCCAAAATCAATGGTGAGCTTACGCATTTAGACAATAATAGTTTATCTGAAGAGCAAGCACTTGCTTTAGTTGAAT
CTGCGATGTCAGAAAAGCAGAAAAAAGAGTATCACGATACTAAAGAGTGTAACTTTGCGATTGCCACCGAAGAGGGACGT
TTTCGTATTTCTGCTTTTTGGCAACGTGATAAAGCGGGTATGGTGGTCAGGCGTATTGTGAGTTCTATTCCTGATGTGAA
TGACTTAGGCTTGCCGCCAGTATTAACCGATGTGATCATGTCAAAACGGGGTTTAGTACTGTTTGTTGGTGGTACTGGTA
CAGGTAAATCAACTTCTCTAGCGGCGTTAATTGGTTATCGTAATCGGAATCAACGTGGCCATATTTTAACGATTGAAGAC
CCAATTGAATTTGTTCATGAGCACCAAAAAAGTATTGTTACGCAACGTGAAGTTGGCTTAGATACAGAAAGCTTTGAATC
GGCATTAAAAAGTTCATTACGCCAAGCGCCAGATGTTATCTTAATTGGTGAAATTCGCTCACAAGAAACCATGGAATACG
CATTAAGTTTTGCAGAAACGGGGCATTTATGTGTTGCAACCTTACATGCGAATAACGCTAATCAGGCAATTGACCGGATC
ATGCACTTAGTACCAAAAGAAAAGCACGATAAACTAAAATATGATTTGGCACTCAATTTACGCGCTATTGTTGCTCAGCA
ATTAGTGCCCACAGCTGATGGTAATGGTCGAGTTGCAGCAATTGAAGTACTTCTTAATTCGCCGATGATTGCAGAGCTAA
TTAAAAAAGGCGACATTGGTGGTATTAAAGAAACCATGGCTAAATCGCGCGAAATGGGGATGCAAACATTCGATCAAGCC
TTGTTTGAGCATTATCAGCGCCATCGTATTAATTACGCGGACGCATTACATCATGCTGATTCTCCAAATGATTTAAGGCT
GATGATTAAATTGCGTAACAATGAACAGCAAGGCGCTGGATTCTTACAAGGCGTAACGATAGATGGTTTAGGTAACGATC
CTAAAAATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
57.412 |
98.67 |
0.566 |
| pilU | Vibrio cholerae strain A1552 |
56.986 |
97.074 |
0.553 |
| pilU | Acinetobacter baylyi ADP1 |
54.787 |
100 |
0.548 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
41.954 |
92.553 |
0.388 |