Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | PAGA_RS02790 | Genome accession | NZ_CP011011 |
| Coordinates | 622237..623370 (+) | Length | 377 a.a. |
| NCBI ID | WP_029772387.1 | Uniprot ID | - |
| Organism | Pseudoalteromonas agarivorans DSM 14585 | ||
| Function | mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 617237..628370
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PAGA_RS02760 (PAGA_a0636) | - | 617967..618566 (-) | 600 | WP_055254892.1 | XTP/dITP diphosphatase | - |
| PAGA_RS02765 (PAGA_a0637) | - | 618571..619014 (-) | 444 | WP_096041187.1 | DUF4426 domain-containing protein | - |
| PAGA_RS02770 (PAGA_a0638) | - | 619072..619605 (-) | 534 | WP_096041188.1 | YggT family protein | - |
| PAGA_RS02775 (PAGA_a0639) | proC | 619632..620453 (-) | 822 | WP_096041189.1 | pyrroline-5-carboxylate reductase | - |
| PAGA_RS02780 (PAGA_a0640) | - | 620471..621184 (-) | 714 | WP_096041190.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| PAGA_RS02785 (PAGA_a0641) | pilT | 621187..622227 (+) | 1041 | WP_004586840.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| PAGA_RS02790 (PAGA_a0642) | pilU | 622237..623370 (+) | 1134 | WP_029772387.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| PAGA_RS02795 (PAGA_a0643) | ruvX | 623504..623953 (-) | 450 | WP_004586842.1 | Holliday junction resolvase RuvX | - |
| PAGA_RS02800 (PAGA_a0644) | - | 623963..624520 (-) | 558 | WP_004586843.1 | YqgE/AlgH family protein | - |
| PAGA_RS02805 (PAGA_a0645) | gshB | 624645..625595 (-) | 951 | WP_096041191.1 | glutathione synthase | - |
| PAGA_RS02810 (PAGA_a0646) | rsmE | 625671..626405 (-) | 735 | WP_096041192.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| PAGA_RS02815 (PAGA_a0647) | - | 626478..626954 (-) | 477 | WP_024031544.1 | hypothetical protein | - |
| PAGA_RS02820 (PAGA_a0648) | - | 627036..627929 (-) | 894 | WP_024031545.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 377 a.a. Molecular weight: 41842.73 Da Isoelectric Point: 6.3191
>NTDB_id=141434 PAGA_RS02790 WP_029772387.1 622237..623370(+) (pilU) [Pseudoalteromonas agarivorans DSM 14585]
MNLSLNHFLHIMIDKKGSDLFVSSQLPVSAKINGELIALSDDKLSDEQSLALVESAMSDKQKNEFHTTKECNFAIATDEG
RFRISAFWQRDRAGMVIRRIVTQIPDISDLGLPSTLTDVIMSKRGLVLFVGGTGTGKSTSLAALIGYRNRHQRGHILTIE
DPIEFVHEHRKSIITQREVGLDTDSFESALKSSLRQAPDVILIGEIRSQETMEYALSFAETGHLCVATLHANNANQAIDR
IMHLVPKEKHDKLKYDLALNLRAIVAQQLIPTSDGEGRVAAIEILLNSPMVAELIKNGDIGGIKEAMSKSKEMGMQTFDQ
ALFELYKQQRINYADALHHADSPNDLRLMIKLRNNEQQGAGFLQGVTIDGLDDKNSN
MNLSLNHFLHIMIDKKGSDLFVSSQLPVSAKINGELIALSDDKLSDEQSLALVESAMSDKQKNEFHTTKECNFAIATDEG
RFRISAFWQRDRAGMVIRRIVTQIPDISDLGLPSTLTDVIMSKRGLVLFVGGTGTGKSTSLAALIGYRNRHQRGHILTIE
DPIEFVHEHRKSIITQREVGLDTDSFESALKSSLRQAPDVILIGEIRSQETMEYALSFAETGHLCVATLHANNANQAIDR
IMHLVPKEKHDKLKYDLALNLRAIVAQQLIPTSDGEGRVAAIEILLNSPMVAELIKNGDIGGIKEAMSKSKEMGMQTFDQ
ALFELYKQQRINYADALHHADSPNDLRLMIKLRNNEQQGAGFLQGVTIDGLDDKNSN
Nucleotide
Download Length: 1134 bp
>NTDB_id=141434 PAGA_RS02790 WP_029772387.1 622237..623370(+) (pilU) [Pseudoalteromonas agarivorans DSM 14585]
ATGAATTTATCTTTAAATCACTTTTTACACATAATGATTGATAAAAAAGGCTCGGATTTATTTGTCTCTAGTCAATTACC
AGTCAGTGCAAAAATTAATGGTGAGCTTATCGCTCTTAGCGACGATAAGTTAAGTGACGAGCAATCGCTTGCGCTTGTAG
AATCAGCGATGAGCGATAAACAAAAAAACGAATTTCATACCACTAAAGAGTGTAACTTTGCGATAGCCACAGACGAAGGG
CGTTTTCGTATATCGGCTTTTTGGCAGCGCGATAGAGCGGGTATGGTTATTCGCCGCATTGTAACGCAAATACCTGATAT
AAGTGATTTAGGGCTGCCCTCTACACTTACTGATGTGATTATGTCAAAGCGCGGGCTAGTGCTGTTTGTTGGTGGTACTG
GCACGGGTAAATCAACTTCACTGGCTGCCTTAATTGGCTACAGAAATCGTCATCAGCGTGGCCATATACTCACCATTGAA
GATCCGATTGAGTTTGTACACGAGCACCGTAAAAGTATTATTACTCAGCGCGAAGTAGGGCTTGATACCGACAGCTTTGA
GTCGGCACTTAAAAGCTCTTTACGCCAAGCTCCCGATGTTATTTTAATTGGTGAAATACGCTCGCAAGAAACCATGGAAT
ACGCTCTGAGCTTTGCCGAAACGGGTCACTTATGTGTGGCTACATTGCATGCTAATAATGCCAACCAAGCCATTGACCGT
ATTATGCACTTAGTGCCTAAAGAAAAACACGACAAGCTTAAGTACGACTTAGCGCTAAATTTACGCGCCATTGTTGCACA
GCAACTTATTCCCACTTCTGATGGGGAAGGGCGTGTAGCCGCGATTGAAATATTATTAAACTCACCCATGGTGGCAGAGC
TAATTAAAAATGGGGATATTGGTGGCATAAAAGAGGCCATGTCTAAGTCTAAAGAAATGGGTATGCAAACCTTTGACCAA
GCCTTATTTGAGCTATACAAACAGCAGCGTATTAATTACGCCGATGCACTACATCATGCTGACTCGCCAAACGATTTACG
CTTAATGATAAAGCTGCGCAATAATGAGCAACAAGGTGCAGGATTTTTACAAGGTGTAACCATTGATGGACTAGATGATA
AAAACAGCAATTAA
ATGAATTTATCTTTAAATCACTTTTTACACATAATGATTGATAAAAAAGGCTCGGATTTATTTGTCTCTAGTCAATTACC
AGTCAGTGCAAAAATTAATGGTGAGCTTATCGCTCTTAGCGACGATAAGTTAAGTGACGAGCAATCGCTTGCGCTTGTAG
AATCAGCGATGAGCGATAAACAAAAAAACGAATTTCATACCACTAAAGAGTGTAACTTTGCGATAGCCACAGACGAAGGG
CGTTTTCGTATATCGGCTTTTTGGCAGCGCGATAGAGCGGGTATGGTTATTCGCCGCATTGTAACGCAAATACCTGATAT
AAGTGATTTAGGGCTGCCCTCTACACTTACTGATGTGATTATGTCAAAGCGCGGGCTAGTGCTGTTTGTTGGTGGTACTG
GCACGGGTAAATCAACTTCACTGGCTGCCTTAATTGGCTACAGAAATCGTCATCAGCGTGGCCATATACTCACCATTGAA
GATCCGATTGAGTTTGTACACGAGCACCGTAAAAGTATTATTACTCAGCGCGAAGTAGGGCTTGATACCGACAGCTTTGA
GTCGGCACTTAAAAGCTCTTTACGCCAAGCTCCCGATGTTATTTTAATTGGTGAAATACGCTCGCAAGAAACCATGGAAT
ACGCTCTGAGCTTTGCCGAAACGGGTCACTTATGTGTGGCTACATTGCATGCTAATAATGCCAACCAAGCCATTGACCGT
ATTATGCACTTAGTGCCTAAAGAAAAACACGACAAGCTTAAGTACGACTTAGCGCTAAATTTACGCGCCATTGTTGCACA
GCAACTTATTCCCACTTCTGATGGGGAAGGGCGTGTAGCCGCGATTGAAATATTATTAAACTCACCCATGGTGGCAGAGC
TAATTAAAAATGGGGATATTGGTGGCATAAAAGAGGCCATGTCTAAGTCTAAAGAAATGGGTATGCAAACCTTTGACCAA
GCCTTATTTGAGCTATACAAACAGCAGCGTATTAATTACGCCGATGCACTACATCATGCTGACTCGCCAAACGATTTACG
CTTAATGATAAAGCTGCGCAATAATGAGCAACAAGGTGCAGGATTTTTACAAGGTGTAACCATTGATGGACTAGATGATA
AAAACAGCAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Acinetobacter baylyi ADP1 |
56.499 |
100 |
0.565 |
| pilU | Pseudomonas stutzeri DSM 10701 |
56.8 |
99.469 |
0.565 |
| pilU | Vibrio cholerae strain A1552 |
56.131 |
97.347 |
0.546 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.659 |
95.756 |
0.408 |