Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   N805_RS23095 Genome accession   NZ_CP010979
Coordinates   5232596..5234086 (-) Length   496 a.a.
NCBI ID   WP_019473555.1    Uniprot ID   A0AAU8SM50
Organism   Pseudomonas putida S13.1.2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5227596..5239086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N805_RS23075 (N805_23080) - 5227599..5228510 (-) 912 WP_019473573.1 LysR substrate-binding domain-containing protein -
  N805_RS23080 (N805_23085) ycaC 5228646..5229275 (+) 630 WP_012274792.1 isochorismate family cysteine hydrolase YcaC -
  N805_RS23085 (N805_23090) - 5229627..5229920 (-) 294 WP_019473574.1 hypothetical protein -
  N805_RS23090 (N805_23095) - 5230611..5232398 (-) 1788 WP_019473556.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  N805_RS23095 (N805_23100) comM 5232596..5234086 (-) 1491 WP_019473555.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  N805_RS23100 (N805_23105) - 5234344..5236362 (+) 2019 WP_019473554.1 DUF4034 domain-containing protein -
  N805_RS23105 (N805_23110) - 5236458..5236721 (-) 264 WP_026034671.1 accessory factor UbiK family protein -
  N805_RS23110 (N805_23115) glnK 5237083..5237421 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  N805_RS23115 (N805_23120) - 5237468..5238799 (+) 1332 WP_016502193.1 ammonium transporter -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52925.66 Da        Isoelectric Point: 7.7103

>NTDB_id=141081 N805_RS23095 WP_019473555.1 5232596..5234086(-) (comM) [Pseudomonas putida S13.1.2]
MSLALVHSRAQVGVQAPSVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPTASLAEVECLGELALSGKLRAVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILHQRPYPDLSEVQGQLAAKRALMLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLSSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
EASADVAARVAQAREVQQRRQGCVNAFLDLEGLRRHCGLTAADQTWLEGACERLTLSLRAAHRLLKVARTLADLEGCEAI
GRPHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=141081 N805_RS23095 WP_019473555.1 5232596..5234086(-) (comM) [Pseudomonas putida S13.1.2]
ATGTCCCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGTGTGCAGGCACCTTCGGTCAGCGTCGAAACCCACCTGGCAAA
CGGCCTGCCCCATCTCACCCTGGTCGGCCTGCCAGAAACCACGGTCAAGGAAAGCAAGGACCGCGTACGCAGCGCCATCG
TCAACTCCGGGCTGAACTACCCGCAGCGGCGCATTACCCAGAACCTGGCCCCCGCCGACTTGCCCAAGGATGGCGGGCGC
TACGACCTGGCCATTGCCCTGGGCATCCTTGCCGCCGACGGCCAGGTGCCAACGGCCAGCCTTGCAGAAGTCGAGTGCCT
GGGCGAACTGGCGTTGTCGGGCAAATTGCGGGCAGTGCAAGGCGTGCTGCCGGCGGCCCTGGCGGCACGCGAGGCGGGCC
GGGCGCTGGTGGTTCCGCGCGAGAATGCCGAGGAAGCCAGCCTGGCCGGCGGGCTGGTGGTGTATGCGGTGGGCCACCTG
CTGGAGCTGGTCGCCCACCTGAACGGCCAGGTGCCATTGCCGCCATACGCGGCCAATGGCTTGATCCTGCATCAACGCCC
CTACCCCGACCTGAGCGAGGTACAGGGCCAGCTGGCGGCCAAGCGCGCGTTGATGCTAGCGGCGGCTGGGGCGCACAACC
TGTTGTTCACCGGGCCACCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCCGGGCTGCTGCCACCGCTGGACGAG
CACGAGGCGCTTGAGGTGGCGGCCATCCAGTCGGTCAGCGGGCATACACCGCTGAGCAGTTGGCCGCAGCGACCGTTTCG
CCACCCTCACCACTCCGCATCCGGCCCGGCACTGGTCGGTGGCAGCAGCCGGCCGCAACCGGGCGAAATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTCGATGAACTGCCAGAGTTTGAGCGGCGCGTGCTGGAAGTGCTGCGCGAGCCACTGGAGTCG
GGCGAAATCGTGATTGCCCGGGCCCGCGACAAGGTGCGCTTTCCGGCGCGCTTTCAGCTGGTGGCGGCGATGAACCCGTG
CCCTTGCGGCTACCTGGGCGACCCCACTGGCCGCTGCCGCTGCAGCACCGAGCAGATCGCGCGGTACCGCAACAAGCTGT
CCGGGCCGCTGCTGGACCGCATCGACCTGCACCTGACCGTGGCCCGCGAGAGCACCACGCTGAACAACCAGCCCTGTGGT
GAAGCCAGTGCCGATGTGGCCGCCAGGGTGGCGCAGGCGCGGGAGGTACAGCAGCGCCGCCAAGGGTGTGTGAATGCGTT
TCTCGACCTCGAAGGGTTGCGCCGCCATTGCGGATTGACGGCGGCGGATCAGACGTGGCTGGAGGGGGCCTGCGAACGGT
TGACCTTGTCGTTGCGGGCGGCGCACCGGTTATTGAAAGTGGCACGAACACTGGCGGACCTGGAGGGTTGTGAGGCGATC
GGCCGGCCACATCTGGCCGAGGCCCTGCAATATCGGCCGGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.627

100

0.569
  comM Haemophilus influenzae Rd KW20

55.2

100

0.556
  comM Vibrio cholerae strain A1552

55.556

99.798

0.554
  comM Glaesserella parasuis strain SC1401

53.892

100

0.544
  comM Legionella pneumophila str. Paris

48.992

100

0.49
  comM Legionella pneumophila strain ERS1305867

48.992

100

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.72

100

0.474

Multiple sequence alignment