Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   UC35_RS10875 Genome accession   NZ_CP010951
Coordinates   2253852..2255387 (-) Length   511 a.a.
NCBI ID   WP_061499221.1    Uniprot ID   A0A127JTN8
Organism   Ramlibacter tataouinensis strain 5-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2248852..2260387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UC35_RS10860 (UC35_10870) metH 2249422..2252118 (+) 2697 WP_145979612.1 methionine synthase -
  UC35_RS10865 (UC35_10875) - 2252191..2252631 (+) 441 WP_061499215.1 glycine zipper 2TM domain-containing protein -
  UC35_RS10870 (UC35_10880) - 2252653..2253855 (-) 1203 WP_061499218.1 MFS transporter -
  UC35_RS10875 (UC35_10885) comM 2253852..2255387 (-) 1536 WP_061499221.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  UC35_RS10880 (UC35_10890) - 2255597..2256418 (+) 822 WP_227820524.1 TorF family putative porin -
  UC35_RS10885 (UC35_10895) glnK 2256444..2256782 (+) 339 WP_061499227.1 P-II family nitrogen regulator -
  UC35_RS10890 (UC35_10900) - 2256810..2258336 (+) 1527 WP_061499229.1 ammonium transporter -
  UC35_RS10895 (UC35_10905) - 2258430..2259095 (-) 666 WP_061499233.1 hypothetical protein -
  UC35_RS10900 (UC35_10910) - 2259261..2260178 (+) 918 WP_061499239.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 53659.38 Da        Isoelectric Point: 8.0853

>NTDB_id=140855 UC35_RS10875 WP_061499221.1 2253852..2255387(-) (comM) [Ramlibacter tataouinensis strain 5-10]
MSLSLVQSRAQLGLQAAAVTVEVHLANGLPSFTLVGLADVEVKEARERVRSALQNCGLEFPHNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQVDAAKLAGWEFAGELSLSGELRPVRGALAMSLALHAAGASARLVLPPGSAEDAALVPQAQVYRA
DHLLDVVRQFLPGPPSHDAGPGWRQVVPQPALGAASHPDLADVKGQAAARRALEIAAAGGHSLLLLGPPGSGKSMLAQRF
AGLLPPLSVDEALQTAAIASLAGRFSQSEWGLRPTRSPHHSASAVALVGGGSPPRPGEISLAHNGVLFLDELPEFPRAAL
EALREPLETGHITISRAAHRAEFPARFQFVGAMNPCPCGWLGAAHRHCRCTPDQVARYQARLSGPLLDRIDLHVEVPALG
AEELLQAPEGEASQAVRERCQAAHVRSLQRQGKPNQALQGKELDAHAQLDAAALKFLHLAASRLGWSARATHRAMKVART
IADLAGAGSIEVAHIAEAVQYRRALATTIAA

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=140855 UC35_RS10875 WP_061499221.1 2253852..2255387(-) (comM) [Ramlibacter tataouinensis strain 5-10]
ATGAGCTTGTCTCTTGTGCAAAGCCGCGCGCAGCTCGGCCTGCAGGCCGCCGCCGTCACGGTCGAGGTGCACCTGGCCAA
CGGGCTGCCCAGCTTCACGCTGGTCGGCCTGGCCGACGTCGAAGTGAAGGAAGCGCGCGAGCGGGTGCGCTCGGCGCTGC
AGAACTGCGGCCTGGAGTTCCCGCACAACAAGCGCATCACGGTGAATCTGGCGCCGGCCGACCTGCCCAAGGACTCCGGC
CGCTTCGACCTGCCGATCGCGCTGGGCATCCTGGCGGCCAGCGGCCAGGTCGATGCAGCCAAGCTGGCAGGCTGGGAGTT
CGCCGGCGAGCTCTCGCTGTCGGGCGAGCTGCGGCCGGTGCGCGGCGCCCTGGCCATGAGCCTGGCGCTGCACGCCGCCG
GCGCCAGCGCCAGGCTGGTGCTGCCGCCCGGCAGCGCCGAGGACGCCGCGCTGGTGCCGCAGGCCCAGGTGTACCGGGCC
GACCACCTGCTCGACGTCGTGCGGCAGTTCCTGCCCGGTCCGCCCAGCCACGATGCAGGACCGGGATGGCGCCAGGTGGT
GCCGCAGCCGGCACTGGGCGCGGCGTCGCACCCGGACCTCGCTGACGTCAAGGGCCAGGCCGCCGCCCGGCGGGCTTTGG
AGATCGCCGCGGCCGGCGGGCACAGCCTGCTGCTGCTCGGCCCGCCGGGGTCGGGCAAGTCCATGCTGGCGCAGCGCTTC
GCCGGACTGCTGCCGCCGCTGTCGGTGGACGAAGCGCTGCAGACCGCGGCCATCGCCAGCCTCGCCGGGCGCTTCTCGCA
GTCGGAATGGGGGCTGCGGCCGACACGCAGCCCGCATCACAGTGCCAGCGCCGTCGCCTTGGTCGGTGGCGGTTCGCCGC
CGCGGCCCGGCGAAATCTCGCTGGCGCACAACGGCGTGCTGTTCCTCGATGAACTGCCGGAGTTTCCGCGCGCCGCCCTC
GAAGCGCTGCGCGAACCCCTGGAAACCGGCCACATCACCATCTCGCGCGCGGCGCACCGCGCCGAATTCCCGGCGCGCTT
CCAGTTCGTCGGCGCCATGAATCCCTGTCCCTGCGGCTGGCTGGGCGCGGCGCACCGCCACTGCCGCTGCACGCCGGACC
AGGTCGCGCGCTACCAGGCCCGCTTGAGCGGGCCGCTGCTCGATCGCATCGACCTGCATGTCGAGGTGCCGGCGCTCGGC
GCCGAGGAACTGCTGCAGGCGCCGGAAGGCGAAGCGTCGCAGGCGGTACGCGAGCGCTGCCAGGCGGCGCACGTGCGCTC
CCTGCAGCGCCAGGGCAAGCCGAACCAGGCCTTGCAAGGCAAGGAGCTCGATGCGCACGCGCAGCTCGATGCGGCGGCGC
TGAAGTTCCTCCACCTGGCCGCGTCGCGCCTGGGCTGGAGCGCGCGCGCCACGCACCGCGCGATGAAGGTGGCGCGAACC
ATCGCCGACCTGGCCGGCGCGGGCAGCATCGAGGTCGCCCACATCGCGGAGGCGGTGCAGTACCGGCGGGCGCTGGCGAC
GACAATCGCCGCATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(410-502)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(199-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127JTN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.057

99.217

0.526
  comM Haemophilus influenzae Rd KW20

51.976

99.022

0.515
  comM Vibrio campbellii strain DS40M4

51.575

99.413

0.513
  comM Glaesserella parasuis strain SC1401

51.473

99.609

0.513
  comM Legionella pneumophila str. Paris

49.116

99.609

0.489
  comM Legionella pneumophila strain ERS1305867

49.116

99.609

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.487

97.652

0.425

Multiple sequence alignment