Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   UC34_RS03095 Genome accession   NZ_CP010897
Coordinates   680624..681139 (+) Length   171 a.a.
NCBI ID   WP_044453880.1    Uniprot ID   -
Organism   Pandoraea vervacti strain NS15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 675624..686139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UC34_RS03085 (UC34_03150) uvrA 676063..678927 (-) 2865 WP_044453877.1 excinuclease ABC subunit UvrA -
  UC34_RS03090 (UC34_03155) - 679430..680593 (+) 1164 WP_044453878.1 MFS transporter -
  UC34_RS03095 (UC34_03160) ssb 680624..681139 (+) 516 WP_044453880.1 single-stranded DNA-binding protein Machinery gene
  UC34_RS03100 (UC34_03165) - 681258..682070 (-) 813 WP_174556759.1 aldolase -
  UC34_RS03105 (UC34_03170) - 682088..683398 (-) 1311 WP_237165221.1 MFS transporter -
  UC34_RS03110 (UC34_03175) - 683649..684323 (+) 675 WP_157122990.1 helix-turn-helix domain-containing protein -
  UC34_RS03115 (UC34_03180) - 684325..685320 (-) 996 WP_044453886.1 fumarylacetoacetate hydrolase family protein -
  UC34_RS03120 (UC34_03185) - 685345..685995 (-) 651 WP_044453887.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 17830.53 Da        Isoelectric Point: 5.3177

>NTDB_id=140711 UC34_RS03095 WP_044453880.1 680624..681139(+) (ssb) [Pandoraea vervacti strain NS15]
MASVNKVILVGNLGADPEVRYMPSGDAVANIRLATTDRYKDKQSGEFKEMTEWHRVSFFGRLAEIVNEYLKKGSSVYIEG
RIRTRKYQAQDGTDRYSTEIVADQMQMLGGRGGEGGGGGGGGGYSRGGGGDEGGGGGYSRGGGGGGGGGRQQAPAKQSGG
GFDDMDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=140711 UC34_RS03095 WP_044453880.1 680624..681139(+) (ssb) [Pandoraea vervacti strain NS15]
ATGGCATCAGTCAACAAAGTGATTCTGGTCGGCAATCTGGGCGCCGACCCCGAAGTCCGCTACATGCCGAGCGGCGATGC
GGTTGCGAACATTCGTCTGGCGACGACCGATCGTTACAAGGACAAGCAGTCCGGCGAGTTCAAGGAAATGACCGAATGGC
ACCGTGTGTCGTTCTTCGGCCGTCTTGCGGAAATCGTCAACGAATACCTGAAGAAGGGCTCGTCGGTGTATATCGAAGGC
CGTATCCGCACGCGCAAGTATCAGGCGCAGGACGGTACGGACCGTTACAGCACGGAGATCGTGGCCGACCAGATGCAGAT
GCTCGGCGGCCGTGGTGGTGAAGGCGGCGGCGGCGGCGGTGGCGGTGGCTACTCGCGCGGCGGCGGCGGTGACGAAGGCG
GTGGTGGCGGCTACTCGCGCGGCGGTGGTGGCGGCGGCGGCGGTGGTCGTCAGCAAGCCCCGGCCAAGCAGTCGGGCGGC
GGCTTCGACGACATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.934

100

0.55
  ssb Glaesserella parasuis strain SC1401

48.889

100

0.515
  ssb Neisseria meningitidis MC58

44.571

100

0.456
  ssb Neisseria gonorrhoeae MS11

44.571

100

0.456
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.079

100

0.386

Multiple sequence alignment