Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   RDF_RS00405 Genome accession   NZ_CP010867
Coordinates   63824..64735 (+) Length   303 a.a.
NCBI ID   WP_000912100.1    Uniprot ID   A0A0E1EEL0
Organism   Streptococcus agalactiae strain SS1     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 58824..69735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDF_RS00385 (RDF_0045) purE 59359..59847 (+) 489 WP_001182532.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  RDF_RS00390 (RDF_0046) purK 59834..60925 (+) 1092 WP_001084004.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  RDF_RS00395 (RDF_0047) - 60979..62349 (+) 1371 WP_001079804.1 hypothetical protein -
  RDF_RS00400 (RDF_0048) purB 62374..63672 (+) 1299 WP_000572887.1 adenylosuccinate lyase -
  RDF_RS00405 (RDF_0049) comR 63824..64735 (+) 912 WP_000912100.1 helix-turn-helix domain-containing protein Regulator
  RDF_RS00410 (RDF_0050) ruvB 65032..66030 (+) 999 WP_000196633.1 Holliday junction branch migration DNA helicase RuvB -
  RDF_RS00415 (RDF_0051) - 66182..66619 (+) 438 WP_000754813.1 low molecular weight protein-tyrosine-phosphatase -
  RDF_RS00420 (RDF_0052) - 66626..67006 (+) 381 WP_000787700.1 membrane protein -
  RDF_RS00425 (RDF_0053) - 67003..68781 (+) 1779 WP_001220909.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 35654.11 Da        Isoelectric Point: 5.6370

>NTDB_id=140366 RDF_RS00405 WP_000912100.1 63824..64735(+) (comR) [Streptococcus agalactiae strain SS1]
MLKHFGSKVRNLRVTRNITREDFCGDETELSVRQLARIESGQSIPNLTKAHYIAKQLNVKLDILTGGESLELPKRYKELK
YLILRIPTYADAERLKLRECQFDHIFEEFYDNLPEDECLAIDSLQAKFEVYQTGDINFGVEVLCECFDKVKYKEKYTLND
LIIIDLFLTCAVVSKFNNRAFTKEVFQTICKTLISQNHKLTAEDLFWFNHVLLNCVFVGLCLNSEECLAEMLEVSRQTMV
STHDFHKMPLYFMYQWKYFITIDNDIKSAENAYQQSIMFSKMIDDKHLIKKLELEWQEDITGH

Nucleotide


Download         Length: 912 bp        

>NTDB_id=140366 RDF_RS00405 WP_000912100.1 63824..64735(+) (comR) [Streptococcus agalactiae strain SS1]
ATGTTAAAACATTTTGGTAGTAAAGTAAGAAATTTGAGAGTAACTAGAAATATTACTCGCGAAGATTTTTGTGGTGATGA
AACTGAGTTATCTGTAAGACAATTAGCTAGGATTGAAAGTGGACAGTCAATTCCAAACTTGACTAAAGCTCACTACATAG
CTAAACAATTGAATGTAAAATTGGATATTTTAACAGGAGGAGAGAGCTTAGAATTACCTAAACGGTATAAAGAGTTGAAG
TATTTGATTTTAAGAATTCCAACTTATGCAGATGCTGAACGATTAAAATTAAGAGAATGTCAGTTTGATCATATTTTCGA
AGAATTCTATGATAATCTTCCAGAAGACGAGTGCTTAGCAATTGACAGTTTACAAGCTAAATTTGAAGTCTATCAAACAG
GAGACATTAATTTTGGTGTGGAGGTTTTATGCGAATGCTTTGATAAAGTAAAATATAAAGAAAAATATACTCTTAATGAT
TTGATTATCATAGATTTGTTTTTAACTTGTGCAGTTGTATCTAAATTTAACAATAGAGCATTTACTAAAGAAGTATTTCA
AACTATATGTAAAACTTTGATAAGTCAGAACCACAAACTTACAGCAGAAGATTTGTTTTGGTTTAATCATGTACTCCTGA
ATTGTGTATTTGTTGGACTTTGTTTAAATAGTGAAGAGTGTCTTGCAGAAATGTTAGAAGTTAGCCGACAAACGATGGTG
TCAACACATGATTTTCATAAAATGCCTTTATATTTTATGTACCAATGGAAATACTTCATTACAATTGACAATGATATAAA
GTCTGCAGAAAATGCTTACCAACAATCAATTATGTTTTCAAAAATGATTGATGACAAGCATCTAATTAAAAAATTAGAAT
TGGAGTGGCAAGAAGATATAACAGGACATTGA

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(73-296)

Helix-turn-helix (HTH_3)

(10-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E1EEL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus pyogenes MGAS315

52.667

99.01

0.521
  comR Streptococcus mutans UA159

44.816

98.68

0.442
  comR Streptococcus pyogenes MGAS8232

42.904

100

0.429
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

44.33

96.04

0.426

Multiple sequence alignment