Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VAA049_RS16675 Genome accession   NZ_CP010811
Coordinates   3620118..3620654 (-) Length   178 a.a.
NCBI ID   WP_001887866.1    Uniprot ID   -
Organism   Vibrio cholerae strain 1154-74     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3615118..3625654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAA049_RS16655 (VAA049_3275) - 3615573..3615890 (-) 318 WP_000252812.1 MSHA biogenesis protein MshK -
  VAA049_RS16660 (VAA049_3276) gspM 3615883..3616533 (-) 651 WP_000835149.1 type II secretion system protein GspM -
  VAA049_RS16665 (VAA049_3277) - 3616530..3617969 (-) 1440 WP_032481367.1 PilN domain-containing protein -
  VAA049_RS16670 (VAA049_3278) csrD 3617982..3619994 (-) 2013 WP_046122270.1 RNase E specificity factor CsrD -
  VAA049_RS16675 (VAA049_3279) ssb 3620118..3620654 (-) 537 WP_001887866.1 single-stranded DNA-binding protein Machinery gene
  VAA049_RS16680 (VAA049_3280) qstR 3620946..3621590 (+) 645 WP_046122271.1 LuxR C-terminal-related transcriptional regulator Regulator
  VAA049_RS16685 (VAA049_3281) galU 3621763..3622635 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VAA049_RS16690 (VAA049_3282) uvrA 3622791..3625613 (+) 2823 WP_000357696.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 20012.21 Da        Isoelectric Point: 5.2581

>NTDB_id=139966 VAA049_RS16675 WP_001887866.1 3620118..3620654(-) (ssb) [Vibrio cholerae strain 1154-74]
MASRGVNKVILIGNLGQDPEVRYMPSGDAMVNLTVATSETWRDKATGEQKEKTEWHRVSVFGKTAEFIGEYARKGTQVYV
DGQLQTRKWQDQQGQERYTTEVVVRWPAGEVQIMGSRPQQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQY
SQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=139966 VAA049_RS16675 WP_001887866.1 3620118..3620654(-) (ssb) [Vibrio cholerae strain 1154-74]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGATGCGATGGTGAATTTAACTGTTGCAACCTCCGAAACTTGGCGTGATAAAGCCACTGGTGAGCAAAAGGAAAAAACCG
AATGGCATAGAGTGTCTGTTTTCGGTAAAACCGCTGAATTCATTGGTGAATATGCGCGTAAGGGAACCCAAGTTTATGTT
GATGGGCAACTGCAAACGCGCAAGTGGCAAGACCAGCAAGGGCAAGAGCGTTATACGACGGAAGTGGTTGTGCGTTGGCC
TGCGGGTGAAGTGCAAATTATGGGCAGTCGTCCTCAACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCACCAG
CGCAGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTAC
TCGCAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

83.146

100

0.831
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.517
  ssb Neisseria meningitidis MC58

43.889

100

0.444
  ssb Neisseria gonorrhoeae MS11

43.889

100

0.444

Multiple sequence alignment