Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   VAA049_RS16680 Genome accession   NZ_CP010811
Coordinates   3620946..3621590 (+) Length   214 a.a.
NCBI ID   WP_046122271.1    Uniprot ID   -
Organism   Vibrio cholerae strain 1154-74     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3615946..3626590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAA049_RS16665 (VAA049_3277) - 3616530..3617969 (-) 1440 WP_032481367.1 PilN domain-containing protein -
  VAA049_RS16670 (VAA049_3278) csrD 3617982..3619994 (-) 2013 WP_046122270.1 RNase E specificity factor CsrD -
  VAA049_RS16675 (VAA049_3279) ssb 3620118..3620654 (-) 537 WP_001887866.1 single-stranded DNA-binding protein Machinery gene
  VAA049_RS16680 (VAA049_3280) qstR 3620946..3621590 (+) 645 WP_046122271.1 LuxR C-terminal-related transcriptional regulator Regulator
  VAA049_RS16685 (VAA049_3281) galU 3621763..3622635 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VAA049_RS16690 (VAA049_3282) uvrA 3622791..3625613 (+) 2823 WP_000357696.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24764.63 Da        Isoelectric Point: 9.6461

>NTDB_id=139967 VAA049_RS16680 WP_046122271.1 3620946..3621590(+) (qstR) [Vibrio cholerae strain 1154-74]
MQRANYARTIYLLTTQPKVLHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=139967 VAA049_RS16680 WP_046122271.1 3620946..3621590(+) (qstR) [Vibrio cholerae strain 1154-74]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCAAAAGTGTTACATCCCAGTATTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATTTTGTTTAATGTCGAGAAACGGTTAAGAACGGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACTGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTGTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

99.533

100

0.995
  qstR Vibrio parahaemolyticus RIMD 2210633

51.628

100

0.519
  qstR Vibrio campbellii strain DS40M4

51.869

100

0.519

Multiple sequence alignment