Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VAA049_RS00110 Genome accession   NZ_CP010811
Coordinates   22732..24255 (+) Length   507 a.a.
NCBI ID   WP_046121247.1    Uniprot ID   -
Organism   Vibrio cholerae strain 1154-74     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 17732..29255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAA049_RS00095 (VAA049_18) ilvE 19304..20242 (-) 939 WP_046121245.1 branched-chain-amino-acid transaminase -
  VAA049_RS00100 (VAA049_19) ilvM 20254..20538 (-) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  VAA049_RS00105 (VAA049_20) ilvG 20550..22196 (-) 1647 WP_046121246.1 acetolactate synthase 2 catalytic subunit -
  VAA049_RS00110 (VAA049_21) comM 22732..24255 (+) 1524 WP_046121247.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VAA049_RS00115 (VAA049_22) - 24345..25229 (+) 885 WP_046121248.1 acyltransferase -
  VAA049_RS00120 (VAA049_23) - 25306..25908 (-) 603 WP_046121249.1 thiol:disulfide interchange protein DsbA/DsbL -
  VAA049_RS00125 (VAA049_24) - 25939..26925 (-) 987 WP_000189620.1 serine/threonine protein kinase -
  VAA049_RS00130 (VAA049_25) ccoG 26973..28397 (-) 1425 WP_046121250.1 cytochrome c oxidase accessory protein CcoG -
  VAA049_RS00135 (VAA049_26) - 28798..29064 (-) 267 WP_000649654.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55033.10 Da        Isoelectric Point: 8.3602

>NTDB_id=139925 VAA049_RS00110 WP_046121247.1 22732..24255(+) (comM) [Vibrio cholerae strain 1154-74]
MGLAIIHSRASVGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARNKLESYEFIGELALSGEIRGVKGVLPAALAANQVERCLVVPHSNGDQAALVGVERHKSAQSL
LEVCADLCGQQTLSLFQSSPSVQQVSQARDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASIASLTQQEINQHNWKLRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGDR
GESTAAVRQRVWVARERMLARSGKVNALLQSREIEQYCPLLKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEAQ
IARPHLAEALGYRAMDRLLKQLSAQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=139925 VAA049_RS00110 WP_046121247.1 22732..24255(+) (comM) [Vibrio cholerae strain 1154-74]
ATGGGACTTGCGATCATTCATAGCCGCGCCAGTGTTGGCGTGCAGGCACCTCCGGTCACGGTTGAGGTTCACATCAGTAA
CGGGATGCCGGGGTTTACCTTAGTTGGGTTGCCGGAAACCACGGTAAAAGAGTCGCGCGATCGGGTGCGCAGCGCGATCA
TCAATTCTCGCTTTGAGTTTCCAGCGAAGCGCATTACGGTCAATTTAGCGCCAGCCGATTTACCCAAAGAGGGGGGACGT
TTTGATTTGCCGATTGCACTTGGCATTTTGGCGGCCTCGGATCAAATTGCGCGAAATAAGCTCGAAAGTTACGAATTTAT
CGGCGAATTGGCGCTATCGGGCGAAATTCGTGGCGTGAAAGGGGTTTTGCCTGCCGCGCTTGCGGCTAACCAAGTGGAGC
GCTGTTTGGTGGTGCCGCACAGTAATGGCGATCAGGCGGCTTTGGTCGGGGTTGAGCGGCATAAGTCGGCGCAAAGCTTA
CTCGAAGTGTGCGCGGACTTGTGTGGTCAGCAAACTCTATCTTTGTTTCAAAGTTCGCCCAGTGTGCAACAAGTGAGTCA
GGCGCGCGATCTGCAAGACATCATAGGTCAGCAGCAGGGAAAACGAGCTTTAGAAATCGCTGCGGCTGGCAATCACAACC
TATTGTTTCTCGGCCCTCCGGGGACGGGTAAAACCATGCTCGCTTCACGGCTGTGCGATTTACTGCCAGAAATGAGTGAT
GAAGAGGCAATGGAAACAGCCTCGATTGCCTCTCTTACGCAGCAAGAGATTAACCAACACAACTGGAAGTTACGCCCTTT
TCGTGCACCGCACCATTCAAGCTCAATGGCGGCTTTAGTCGGGGGCGGCACCATTCCGCGCCCCGGTGAAATTTCTCTCG
CCCATAATGGGTTACTATTTTTGGACGAAATGCCGGAGTTTGAGCGTAAAGTGCTTGATTCACTGCGTGAACCGCTGGAA
TCGGGTGAGATCGTGATTTCGCGCGCGCAGGGGAAAACCCGTTTTCCAGCACGCTTTCAATTGGTCGGCGCGTTAAATCC
AAGCCCCACGGGCTACTACGAAGGCAGTCAGGCGCGTGCCAATCCGCAGAGTATTTTGCGCTATTTGAGTCGGCTTTCGG
GCCCTTTGTTGGATCGCTTTGATATGTCGATTGAGATCCCAGCGTTACCCAAAGGTACGCTCGCCAATGGGGGCGATCGT
GGTGAATCGACGGCGGCTGTGCGCCAGCGAGTGTGGGTAGCGCGTGAGCGTATGTTGGCGCGATCGGGCAAAGTGAATGC
TTTGCTGCAAAGTCGAGAAATTGAACAGTATTGCCCTTTGCTTAAAGCGGATGCGGAATTTCTAGAAAGCGCGCTGCATC
GCTTGGGTTTATCTATTCGGGCTTACCATCGCATCATTAAAGTGGCGCGAACCATAGCGGATTTGCAAGGTGAAGCGCAG
ATCGCTCGTCCACATTTGGCCGAGGCGTTGGGCTATCGAGCCATGGATCGCTTACTCAAACAGCTCAGTGCGCAGAACGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

99.606

100

0.996
  comM Vibrio campbellii strain DS40M4

85.207

100

0.852
  comM Haemophilus influenzae Rd KW20

67.061

100

0.671
  comM Glaesserella parasuis strain SC1401

63.953

100

0.651
  comM Legionella pneumophila str. Paris

50.605

97.83

0.495
  comM Legionella pneumophila strain ERS1305867

50.605

97.83

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.222

100

0.434

Multiple sequence alignment