Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PG1C_RS13370 Genome accession   NZ_CP010554
Coordinates   2706219..2707721 (-) Length   500 a.a.
NCBI ID   WP_202635226.1    Uniprot ID   A0A0C5JBM4
Organism   Rugosibacter aromaticivorans strain Ca6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2701219..2712721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG1C_RS13355 (PG1C_13145) - 2701771..2704143 (-) 2373 WP_202635223.1 AsmA family protein -
  PG1C_RS13360 (PG1C_13150) - 2704205..2704804 (+) 600 WP_202635224.1 hypothetical protein -
  PG1C_RS13365 (PG1C_13155) - 2704885..2706108 (-) 1224 WP_202635225.1 porin -
  PG1C_RS13370 (PG1C_13160) comM 2706219..2707721 (-) 1503 WP_202635226.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PG1C_RS13375 (PG1C_13165) - 2707741..2707989 (-) 249 WP_202635227.1 accessory factor UbiK family protein -
  PG1C_RS13380 (PG1C_13170) - 2708276..2709097 (+) 822 WP_202635228.1 TorF family putative porin -
  PG1C_RS13385 (PG1C_13175) glnK 2709176..2709514 (+) 339 WP_202635229.1 P-II family nitrogen regulator -
  PG1C_RS13390 (PG1C_13180) - 2709528..2711078 (+) 1551 WP_202635230.1 ammonium transporter -
  PG1C_RS13395 (PG1C_13185) - 2711158..2712138 (-) 981 WP_202635231.1 2-hydroxyacid dehydrogenase -
  PG1C_RS13400 (PG1C_13190) mscL 2712254..2712682 (+) 429 WP_202635232.1 large conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52896.99 Da        Isoelectric Point: 8.6030

>NTDB_id=139187 PG1C_RS13370 WP_202635226.1 2706219..2707721(-) (comM) [Rugosibacter aromaticivorans strain Ca6]
MALAVLRSRALAGLSAPEVTVEVHLTGGLPAFTLVGLPDTEVKEARDRVRAAIQNCGFEFPQRRITVNLAPADLPKESGR
FDLPIALGVLIASGQLKAPTLDDYEFAGELALSGELRAIRGALAMCATMQRDATARRAFILPTDSAPEAALIADMTILPA
KNLLQVCAHLSGRETIASRAVSPAPTFAHYPDLAEVKGQAPAKRALEVAAAGGHSLLMSGPPGAGKSMLAQRLPGLLPPM
TDDEALAAAAVHSLAGLFKLEHWGQRAFRAPHHSASTAALVGGGSVPRPGEISLAHNGTLFLDELPEFQRGVLEALREPL
ETGHIHIARAARRAEFPARFQLIAAMNPCPCGYLGHPSGKCRCTPDQVARYRGKLSGPLLDRIDLMVDVPAISEAELSSR
AAGETSAIVRARVMDARDWQLQRQGKPNAQLTPDEIAKFATPDVAGAKLLAQAMAQLSLSARGYHRILKVARSIADLASA
PAINAAHIAEAIHYRRGLSG

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=139187 PG1C_RS13370 WP_202635226.1 2706219..2707721(-) (comM) [Rugosibacter aromaticivorans strain Ca6]
ATGGCGCTAGCAGTTCTTCGTTCGCGAGCGTTAGCGGGGTTATCGGCGCCGGAAGTCACCGTCGAAGTGCATTTGACGGG
CGGGCTGCCCGCTTTCACCCTCGTTGGTTTGCCCGATACAGAAGTCAAAGAAGCGCGCGATCGGGTGCGCGCGGCCATTC
AAAATTGCGGGTTTGAGTTTCCCCAGCGGCGCATCACGGTGAACCTTGCCCCGGCCGACCTACCCAAAGAATCCGGCCGA
TTTGATTTACCCATTGCCTTAGGGGTCTTGATTGCGTCCGGACAGCTCAAAGCGCCCACCCTTGATGACTACGAATTTGC
AGGTGAGCTGGCGCTCTCTGGCGAGTTGCGCGCTATTCGCGGCGCTTTGGCGATGTGCGCCACCATGCAGCGCGATGCAA
CCGCACGACGCGCTTTCATCTTGCCAACAGATAGTGCACCAGAGGCCGCATTGATCGCGGATATGACCATTCTGCCCGCA
AAAAATCTGCTCCAGGTGTGCGCGCATCTCTCCGGACGGGAAACGATCGCCTCCCGCGCTGTATCACCAGCGCCGACTTT
TGCGCATTATCCCGATCTCGCCGAGGTCAAGGGCCAGGCGCCGGCCAAGCGCGCACTCGAAGTGGCGGCTGCAGGCGGAC
ACAGCCTGCTCATGAGTGGCCCGCCCGGCGCAGGTAAATCCATGCTGGCGCAACGCTTGCCGGGTTTGCTGCCGCCCATG
ACGGACGACGAAGCACTGGCTGCGGCCGCCGTGCATTCTTTGGCAGGACTCTTCAAACTCGAACACTGGGGACAGCGCGC
CTTTCGTGCGCCGCATCATTCCGCCTCAACGGCCGCGTTGGTCGGTGGTGGCAGTGTGCCGCGCCCGGGCGAGATTTCGC
TGGCACATAACGGCACGTTGTTTCTTGATGAACTGCCCGAGTTTCAGCGCGGCGTGCTCGAAGCCCTGCGCGAGCCGCTG
GAAACCGGGCATATCCATATTGCACGCGCTGCGCGGCGGGCTGAGTTTCCCGCACGCTTTCAGCTTATTGCGGCAATGAA
CCCATGCCCTTGCGGTTACTTGGGGCATCCTTCCGGAAAATGCCGTTGCACGCCAGATCAAGTGGCACGCTATCGCGGCA
AACTCTCCGGGCCGTTGCTGGATCGGATTGATCTGATGGTGGACGTGCCGGCCATTTCGGAGGCGGAATTATCCTCGCGA
GCCGCCGGTGAAACCTCCGCGATTGTACGCGCACGGGTGATGGATGCGCGGGATTGGCAATTGCAGCGCCAGGGCAAGCC
GAATGCGCAACTTACCCCCGACGAGATTGCCAAGTTTGCTACGCCGGATGTCGCCGGGGCAAAGCTGCTTGCCCAGGCCA
TGGCGCAGCTTTCATTGTCAGCGCGCGGCTATCACCGCATCCTCAAGGTAGCGCGCAGCATTGCGGATCTTGCGTCAGCA
CCAGCGATTAACGCAGCTCACATTGCCGAAGCCATCCACTATCGGCGCGGGTTGAGCGGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C5JBM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

53.4

100

0.534
  comM Vibrio cholerae strain A1552

53.106

99.8

0.53
  comM Haemophilus influenzae Rd KW20

51.992

100

0.522
  comM Glaesserella parasuis strain SC1401

51.093

100

0.514
  comM Legionella pneumophila str. Paris

48.207

100

0.484
  comM Legionella pneumophila strain ERS1305867

48.207

100

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.272

99.4

0.45

Multiple sequence alignment