Detailed information NTG0138904

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: PGS_RS06755
• Genome accession: NZ_CP013131
• Coordinates: 1582686..1583717 (-)
• Length: 343 a.a.
• NCBI ID: WP_039417351.1
• Uniprot ID: -
• Organism: Porphyromonas gingivalis A7A1-28
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1577686..1588717

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PGS_RS06745 (PGS_00014050)	-	1579718..1581136 (-)	1419	WP_081393582.1	DUF389 domain-containing protein	-
PGS_RS06750 (PGS_00014060)	-	1581158..1582639 (-)	1482	WP_081393587.1	lipopolysaccharide biosynthesis protein	-
PGS_RS06755 (PGS_00014070)	ruvB	1582686..1583717 (-)	1032	WP_039417351.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
PGS_RS06770 (PGS_00014090)	-	1584610..1585122 (+)	513	WP_058019193.1	methylated-DNA--[protein]-cysteine S-methyltransferase	-
PGS_RS06775 (PGS_00014100)	yajC	1585205..1585543 (+)	339	WP_004585014.1	preprotein translocase subunit YajC	-
PGS_RS06780 (PGS_00014110)	-	1585671..1586678 (+)	1008	WP_005873848.1	YbbR-like domain-containing protein	-
PGS_RS06785 (PGS_00014120)	coaE	1586685..1587293 (+)	609	WP_058019194.1	dephospho-CoA kinase	-
PGS_RS06790 (PGS_00014130)	-	1587400..1587831 (+)	432	WP_058019195.1	DUF5606 domain-containing protein	-

Sequence

Protein

• Length: 343 a.a.
• Molecular weight: 37768.02 Da
• Isoelectric Point: 5.8564

>NTDB_id=138904 PGS_RS06755 WP_039417351.1 1582686..1583717(-) (ruvB) [Porphyromonas gingivalis A7A1-28]
MTEEFDIRQERYRGNDGEREVENKLRPLTFDSFSGQDKVVENLSIFVAAARLRGEALDHTLLHGPPGLGKTTLSNIIANE
LGVGLKITSGPVLDKPGDLAGLLTSLESNDVLFIDEIHRLSPLVEEYLYSAMEDYRIDIMLDKGPSARSIQINLSPFTLV
GATTRSGLLTAPLRARFGINLHLEYYDVHTITGIVERSARILEVSCSHDAAIEIAGRSRGTPRIANALLRRVRDFAQVKG
SGAIDKPIACYALEALNIDRYGLDNVDHKLLATIIDKFAGGPVGLSTIATALGEDPGTIEEVYEPFLIKEGFLKRTPRGR
EVTELAYTHLGRNPRPHRPSLFD

Nucleotide

• Length: 1032 bp

>NTDB_id=138904 PGS_RS06755 WP_039417351.1 1582686..1583717(-) (ruvB) [Porphyromonas gingivalis A7A1-28]
ATGACTGAAGAATTTGACATTAGACAGGAGCGTTACCGCGGCAACGACGGCGAACGGGAAGTCGAAAACAAGCTACGCCC
CCTGACGTTCGACAGCTTTAGCGGTCAGGACAAGGTGGTGGAGAATCTGAGCATCTTCGTTGCTGCAGCTCGTTTGCGCG
GCGAGGCCTTGGATCATACGCTGCTGCATGGCCCTCCGGGGCTGGGTAAGACCACGCTGTCGAATATCATAGCCAATGAG
CTTGGCGTGGGGCTTAAGATCACTTCCGGTCCCGTCCTCGACAAGCCGGGTGATCTGGCCGGACTCCTCACTTCGTTGGA
ATCCAACGATGTACTTTTCATAGACGAAATACACCGGCTGAGCCCTCTGGTGGAAGAATATCTCTACTCGGCCATGGAGG
ACTACCGTATAGATATAATGCTGGACAAGGGACCCAGCGCGCGCTCCATTCAGATCAATCTCTCCCCCTTCACCCTTGTG
GGAGCTACTACGCGCAGCGGTTTGCTGACAGCACCCCTTCGTGCTCGTTTCGGGATCAATCTCCATCTGGAGTATTACGA
TGTGCATACTATTACCGGTATCGTGGAGCGGAGTGCACGCATTCTGGAGGTGTCCTGTTCGCACGATGCGGCCATCGAGA
TAGCCGGACGAAGCCGTGGTACGCCTCGTATAGCCAATGCCTTGCTGCGACGTGTAAGGGACTTTGCACAGGTCAAGGGA
TCCGGTGCCATTGACAAACCGATAGCCTGCTATGCTCTCGAAGCCCTGAATATCGACCGCTACGGGCTGGACAATGTGGA
TCACAAGCTCCTCGCCACCATCATAGACAAGTTCGCCGGAGGCCCCGTCGGATTGAGCACCATTGCCACGGCCTTGGGGG
AAGACCCCGGTACGATAGAGGAGGTCTATGAGCCATTCCTGATCAAGGAGGGATTCCTCAAGCGGACACCTCGCGGAAGA
GAAGTGACGGAGCTGGCTTATACGCACTTGGGACGTAATCCCCGTCCGCACCGGCCATCCCTCTTCGACTGA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (261-330)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (25-183)

• RuvB AAA lid domain (AAA_lid_4) (186-259)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.675	92.42	0.542
ruvB	Streptococcus pneumoniae TIGR4	58.28	91.545	0.534
ruvB	Streptococcus pneumoniae R6	58.28	91.545	0.534
ruvB	Streptococcus pneumoniae D39	58.28	91.545	0.534
ruvB	Synechocystis sp. PCC 6803	52.744	95.627	0.504
ruvB	Helicobacter pylori 26695	50.325	89.796	0.452