Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ST12_RS15990 | Genome accession | NZ_CP010521 |
| Coordinates | 3595889..3596332 (-) | Length | 147 a.a. |
| NCBI ID | WP_003369942.1 | Uniprot ID | A0A0C2N5G6 |
| Organism | Clostridium botulinum strain NCTC 8550 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3564328..3602038 | 3595889..3596332 | within | 0 |
Gene organization within MGE regions
Location: 3564328..3602038
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ST12_RS15780 (ST12_15780) | bilQ | 3564328..3564765 (-) | 438 | WP_012451029.1 | bilirubin utilization transcriptional regulator BilQ | - |
| ST12_RS15785 (ST12_15785) | - | 3564977..3566275 (-) | 1299 | WP_012449689.1 | DEAD/DEAH box helicase | - |
| ST12_RS15790 (ST12_15790) | - | 3566606..3566758 (-) | 153 | WP_003373161.1 | zinc-ribbon domain-containing protein | - |
| ST12_RS15795 (ST12_15795) | - | 3567030..3567536 (-) | 507 | WP_012450318.1 | DUF2798 domain-containing protein | - |
| ST12_RS15800 (ST12_15800) | rlmH | 3567699..3568178 (-) | 480 | WP_012450724.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
| ST12_RS15805 (ST12_15805) | - | 3568468..3569109 (-) | 642 | WP_040968354.1 | lactate utilization protein | - |
| ST12_RS15810 (ST12_15810) | - | 3569483..3569980 (-) | 498 | WP_003374022.1 | SEC-C metal-binding domain-containing protein | - |
| ST12_RS15815 (ST12_15815) | - | 3570043..3570834 (-) | 792 | WP_012450919.1 | MBL fold metallo-hydrolase | - |
| ST12_RS15820 (ST12_15820) | - | 3570869..3572131 (-) | 1263 | WP_003370381.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| ST12_RS15825 (ST12_15825) | - | 3572525..3573064 (+) | 540 | WP_012449467.1 | hypothetical protein | - |
| ST12_RS15830 (ST12_15830) | - | 3573241..3573717 (+) | 477 | WP_003373384.1 | dUTP diphosphatase | - |
| ST12_RS15835 (ST12_15835) | - | 3573907..3574338 (+) | 432 | WP_003369607.1 | DMT family transporter | - |
| ST12_RS15840 (ST12_15840) | - | 3574396..3575214 (+) | 819 | WP_012450283.1 | MBL fold metallo-hydrolase | - |
| ST12_RS15845 (ST12_15845) | - | 3575348..3576553 (+) | 1206 | WP_012450935.1 | S8 family serine peptidase | - |
| ST12_RS15850 (ST12_15850) | - | 3576663..3577847 (-) | 1185 | WP_017825380.1 | M23 family metallopeptidase | - |
| ST12_RS15855 (ST12_15855) | - | 3578023..3579012 (+) | 990 | WP_012449871.1 | DnaD domain protein | - |
| ST12_RS15860 (ST12_15860) | - | 3579005..3579985 (+) | 981 | WP_012450454.1 | ATP-binding protein | - |
| ST12_RS15920 (ST12_15920) | - | 3581186..3581770 (-) | 585 | WP_012451320.1 | hypothetical protein | - |
| ST12_RS15925 (ST12_15925) | - | 3581934..3583178 (+) | 1245 | WP_012449819.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| ST12_RS15930 (ST12_15930) | - | 3583348..3584097 (-) | 750 | WP_012450489.1 | acyl-ACP thioesterase domain-containing protein | - |
| ST12_RS15935 (ST12_15935) | - | 3584304..3584486 (-) | 183 | WP_003371961.1 | DUF1858 domain-containing protein | - |
| ST12_RS15940 (ST12_15940) | - | 3584589..3585875 (-) | 1287 | WP_012451558.1 | adenylosuccinate synthase | - |
| ST12_RS15945 (ST12_15945) | - | 3586099..3587271 (+) | 1173 | WP_012450311.1 | malic enzyme-like NAD(P)-binding protein | - |
| ST12_RS15950 (ST12_15950) | proC | 3587972..3588772 (-) | 801 | WP_012451666.1 | pyrroline-5-carboxylate reductase | - |
| ST12_RS15955 (ST12_15955) | - | 3588987..3589340 (+) | 354 | WP_012450834.1 | hypothetical protein | - |
| ST12_RS15960 (ST12_15960) | - | 3589362..3590702 (-) | 1341 | WP_003368893.1 | replicative DNA helicase | - |
| ST12_RS15965 (ST12_15965) | lonC | 3590789..3592681 (-) | 1893 | WP_012450022.1 | Lon family ATP-dependent protease | - |
| ST12_RS15970 (ST12_15970) | rplI | 3592697..3593140 (-) | 444 | WP_012425064.1 | 50S ribosomal protein L9 | - |
| ST12_RS15975 (ST12_15975) | - | 3593143..3595083 (-) | 1941 | WP_003374727.1 | DHH family phosphoesterase | - |
| ST12_RS15980 (ST12_15980) | - | 3595108..3595428 (-) | 321 | WP_003374679.1 | MazG-like family protein | - |
| ST12_RS15985 (ST12_15985) | rpsR | 3595616..3595867 (-) | 252 | WP_003369777.1 | 30S ribosomal protein S18 | - |
| ST12_RS15990 (ST12_15990) | ssbA | 3595889..3596332 (-) | 444 | WP_003369942.1 | single-stranded DNA-binding protein | Machinery gene |
| ST12_RS15995 (ST12_15995) | rpsF | 3596346..3596633 (-) | 288 | WP_026072100.1 | 30S ribosomal protein S6 | - |
| ST12_RS16000 (ST12_16000) | - | 3596743..3596934 (-) | 192 | WP_003373736.1 | DUF951 domain-containing protein | - |
| ST12_RS16005 (ST12_16005) | - | 3596934..3597827 (-) | 894 | WP_012451521.1 | mechanosensitive ion channel family protein | - |
| ST12_RS16010 (ST12_16010) | - | 3597855..3598094 (-) | 240 | WP_012450983.1 | DUF3343 domain-containing protein | - |
| ST12_RS16015 (ST12_16015) | - | 3598496..3599149 (+) | 654 | WP_012451282.1 | LysE family transporter | - |
| ST12_RS16020 (ST12_16020) | - | 3599165..3600322 (+) | 1158 | WP_012449527.1 | aminotransferase class V-fold PLP-dependent enzyme | - |
| ST12_RS16025 (ST12_16025) | yyaC | 3600621..3601223 (+) | 603 | WP_003369076.1 | spore protease YyaC | - |
| ST12_RS16030 (ST12_16030) | - | 3601520..3602038 (-) | 519 | WP_003374247.1 | DUF4446 family protein | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 16065.78 Da Isoelectric Point: 4.5882
>NTDB_id=138904 ST12_RS15990 WP_003369942.1 3595889..3596332(-) (ssbA) [Clostridium botulinum strain NCTC 8550]
MNKVVLIGRLTKDPELRFTPGAGTAVTTLTLAVDKYNSKSGQKEADFVPVVVWGKQAESTANYMSKGSQMAISGRIQTRN
YEAKDGTKRYVTEVVATEVQFLSKSNASGNVGTNYGNNTEYSSSNNPFDDMNFEEDITPVDDGDMPF
MNKVVLIGRLTKDPELRFTPGAGTAVTTLTLAVDKYNSKSGQKEADFVPVVVWGKQAESTANYMSKGSQMAISGRIQTRN
YEAKDGTKRYVTEVVATEVQFLSKSNASGNVGTNYGNNTEYSSSNNPFDDMNFEEDITPVDDGDMPF
Nucleotide
Download Length: 444 bp
>NTDB_id=138904 ST12_RS15990 WP_003369942.1 3595889..3596332(-) (ssbA) [Clostridium botulinum strain NCTC 8550]
ATGAACAAAGTAGTTTTAATCGGAAGATTGACGAAAGATCCAGAACTAAGATTTACTCCTGGAGCTGGAACAGCAGTAAC
TACCTTAACATTAGCAGTTGATAAGTATAATTCTAAATCTGGTCAAAAAGAAGCGGACTTTGTACCTGTAGTTGTATGGG
GAAAACAAGCTGAAAGTACTGCGAATTACATGAGTAAGGGTAGCCAAATGGCTATAAGCGGTAGAATTCAAACCAGAAAT
TATGAAGCAAAAGATGGAACAAAGAGATATGTTACAGAAGTAGTTGCTACAGAAGTTCAATTTTTAAGTAAATCAAATGC
TTCAGGAAATGTTGGTACTAATTATGGTAACAACACTGAATATTCATCATCAAATAATCCATTTGATGATATGAACTTTG
AAGAAGACATAACTCCAGTAGATGATGGAGATATGCCATTCTAA
ATGAACAAAGTAGTTTTAATCGGAAGATTGACGAAAGATCCAGAACTAAGATTTACTCCTGGAGCTGGAACAGCAGTAAC
TACCTTAACATTAGCAGTTGATAAGTATAATTCTAAATCTGGTCAAAAAGAAGCGGACTTTGTACCTGTAGTTGTATGGG
GAAAACAAGCTGAAAGTACTGCGAATTACATGAGTAAGGGTAGCCAAATGGCTATAAGCGGTAGAATTCAAACCAGAAAT
TATGAAGCAAAAGATGGAACAAAGAGATATGTTACAGAAGTAGTTGCTACAGAAGTTCAATTTTTAAGTAAATCAAATGC
TTCAGGAAATGTTGGTACTAATTATGGTAACAACACTGAATATTCATCATCAAATAATCCATTTGATGATATGAACTTTG
AAGAAGACATAACTCCAGTAGATGATGGAGATATGCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
43.605 |
100 |
0.51 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
43.165 |
94.558 |
0.408 |
| ssbA | Streptococcus mutans UA159 |
43.165 |
94.558 |
0.408 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
40.876 |
93.197 |
0.381 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
53.398 |
70.068 |
0.374 |