Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   RC04_RS01405 Genome accession   NZ_CP010497
Coordinates   246571..247008 (+) Length   145 a.a.
NCBI ID   WP_059110889.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC033     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 241571..252008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC04_RS01385 (RC04_01395) kdpD 242059..243990 (+) 1932 WP_002932500.1 sensor histidine kinase KdpD -
  RC04_RS01390 (RC04_01400) uvrB 243985..245958 (-) 1974 WP_002932502.1 excinuclease ABC subunit UvrB -
  RC04_RS01395 (RC04_01405) - 246112..246342 (+) 231 WP_002852327.1 hypothetical protein -
  RC04_RS01400 (RC04_01410) - 246332..246574 (+) 243 WP_002854947.1 hypothetical protein -
  RC04_RS01405 (RC04_01415) Cj0683 246571..247008 (+) 438 WP_059110889.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  RC04_RS01410 (RC04_01420) priA 246990..248843 (+) 1854 WP_002932503.1 primosomal protein N' -
  RC04_RS08640 - 248836..248979 (-) 144 Protein_275 sugar nucleotidyltransferase -
  RC04_RS01415 (RC04_01425) - 248949..250142 (-) 1194 WP_250531207.1 cache domain-containing protein -
  RC04_RS01420 (RC04_01430) zupT 250482..251357 (+) 876 WP_002851840.1 zinc transporter ZupT -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16766.70 Da        Isoelectric Point: 6.9036

>NTDB_id=138460 RC04_RS01405 WP_059110889.1 246571..247008(+) (Cj0683) [Campylobacter jejuni strain CJ677CC033]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLENLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=138460 RC04_RS01405 WP_059110889.1 246571..247008(+) (Cj0683) [Campylobacter jejuni strain CJ677CC033]
ATGAATAAAGCTTTTACTTTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTGAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.31

100

0.993

Multiple sequence alignment