Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   RC31_RS06625 Genome accession   NZ_CP010469
Coordinates   1273378..1274562 (-) Length   394 a.a.
NCBI ID   WP_002932552.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC525     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1268378..1279562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC31_RS06600 (RC31_06590) fliL 1269525..1270061 (+) 537 WP_002868488.1 flagellar basal body-associated protein FliL -
  RC31_RS06605 (RC31_06595) acpS 1270062..1270409 (+) 348 WP_002825806.1 holo-ACP synthase -
  RC31_RS06610 (RC31_06600) - 1270410..1270829 (-) 420 WP_002862076.1 hypothetical protein -
  RC31_RS06615 (RC31_06605) - 1270826..1272187 (-) 1362 WP_002932555.1 cytochrome P450 -
  RC31_RS06620 (RC31_06610) - 1272184..1273305 (-) 1122 WP_002932553.1 hypothetical protein -
  RC31_RS06625 (RC31_06615) kpsS 1273378..1274562 (-) 1185 WP_002932552.1 capsule polysaccharide modification protein KpsS Regulator
  RC31_RS06630 (RC31_06620) kpsC 1274559..1276628 (-) 2070 WP_002932550.1 capsular polysaccharide biosynthesis protein -
  RC31_RS06635 (RC31_06625) cysC 1276625..1277137 (-) 513 WP_002932548.1 cytidine diphosphoramidate kinase -
  RC31_RS08795 - 1277127..1277363 (-) 237 Protein_1298 CTP:phosphoglutamine cytidylyltransferase -
  RC31_RS06640 (RC31_06630) - 1277341..1278105 (-) 765 WP_059110961.1 CTP:phosphoglutamine cytidylyltransferase -
  RC31_RS06645 (RC31_06635) - 1278107..1278709 (-) 603 WP_002931920.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence


Protein


Download         Length: 394 a.a.        Molecular weight: 46828.53 Da        Isoelectric Point: 9.9031

>NTDB_id=137760 RC31_RS06625 WP_002932552.1 1273378..1274562(-) (kpsS) [Campylobacter jejuni strain CJ677CC525]
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAMKMKKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKI
DAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=137760 RC31_RS06625 WP_002932552.1 1273378..1274562(-) (kpsS) [Campylobacter jejuni strain CJ677CC525]
ATGAGATTTAGCACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGGCCTGTGGGAAATTTTTT
TCATCATCTTGCAATGAAAATGAAAAAAAACCAAACCAAAGTTTTTAAACTCAATTTTAACGGTGGAGATTTTTTTTTCT
ATCCTAGTGGGACTAGGTGTAAGTGCGATGAAAAAGATCTTGAAAATTTCTATAGAGATTTTTTTCAAAGCAAAAAAATC
GATGCTATTTTAATGTATAACGATTGTCGCATTATACATGCCAAGGCTATTAAAGTGGCTAAAGAATTAGGAATTGAAAT
ATGGATTTTTGAGGAAGGATATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGAGTGAATGCAAATTCTTCCTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAAAATATTTTTACCAAAGAAAGCATAAAAGAAATTCCAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAATAACAAACTTCATCATCGCAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCATTGTATAGAAAGTATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGAGGAAACCATACTTTCTTTTGCAAATCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGCTATAAGAATTATTCTAAACTCATAAACGATTTAAGTCAAAAATATCATGTAG
AAGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTAGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGTGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTGTC
TTATCCAAAGAAACTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCCAATCCTGTTTTGGTGTGTAATTTTAAGA
AATATCTTTTACAAACTAACCAATTCAACGGCAATTTTTATAAAAATTTCTTTTTAGACAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.477

100

0.985


Multiple sequence alignment