Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ACT75_RS09475 Genome accession   NZ_CP012959
Coordinates   1932000..1932614 (+) Length   204 a.a.
NCBI ID   WP_005542299.1    Uniprot ID   A0A142G244
Organism   Aggregatibacter actinomycetemcomitans strain 624     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1927000..1937614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACT75_RS09445 (ACT75_09435) - 1927644..1928018 (-) 375 WP_005594724.1 transposase -
  ACT75_RS09450 (ACT75_09440) - 1928292..1929560 (+) 1269 WP_005542307.1 NRAMP family divalent metal transporter -
  ACT75_RS09455 (ACT75_09445) nudB 1929666..1930112 (+) 447 WP_005595346.1 dihydroneopterin triphosphate diphosphatase -
  ACT75_RS09460 (ACT75_09450) - 1930146..1930886 (+) 741 WP_005542303.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ACT75_RS09465 (ACT75_09455) - 1930898..1931308 (+) 411 WP_005542301.1 hypothetical protein -
  ACT75_RS09470 (ACT75_09460) ruvC 1931364..1931936 (+) 573 WP_005542300.1 crossover junction endodeoxyribonuclease RuvC -
  ACT75_RS09475 (ACT75_09465) ruvA 1932000..1932614 (+) 615 WP_005542299.1 Holliday junction branch migration protein RuvA Machinery gene
  ACT75_RS09480 (ACT75_09470) ruvB 1932629..1933642 (+) 1014 WP_005545577.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ACT75_RS09485 (ACT75_09475) - 1933696..1934007 (-) 312 WP_005542297.1 DUF5339 domain-containing protein -
  ACT75_RS09490 (ACT75_09480) - 1934459..1936024 (+) 1566 WP_005549162.1 cytochrome ubiquinol oxidase subunit I -
  ACT75_RS09495 (ACT75_09485) cydB 1936039..1937175 (+) 1137 WP_005542295.1 cytochrome d ubiquinol oxidase subunit II -
  ACT75_RS12140 - 1937187..1937285 (+) 99 WP_019518193.1 cytochrome bd oxidase small subunit, CydX/CbdX family -
  ACT75_RS09500 (ACT75_09490) ybgE 1937290..1937577 (+) 288 WP_005542294.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22687.61 Da        Isoelectric Point: 7.4011

>NTDB_id=137759 ACT75_RS09475 WP_005542299.1 1932000..1932614(+) (ruvA) [Aggregatibacter actinomycetemcomitans strain 624]
MIGHLTGILMEKQPPEILLDVQGIGYELLLPMTSFYNLPEVGKQTRLFTHLVVREDAHLLFGFAQKADRTLFRELIKTNG
VGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKTAERLLVELKGKFKEVKTNDFFVQADHLPRFSTEISATVEP
SNEAVAALVALGYKPLDAEKMVKKVSKPELSSEQIIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=137759 ACT75_RS09475 WP_005542299.1 1932000..1932614(+) (ruvA) [Aggregatibacter actinomycetemcomitans strain 624]
ATGATTGGTCATCTCACTGGTATTTTAATGGAAAAACAGCCGCCGGAAATTTTGTTGGATGTGCAAGGTATCGGCTATGA
ACTACTGCTGCCGATGACAAGTTTTTATAACTTGCCGGAAGTAGGCAAACAAACCCGTTTATTTACTCATCTGGTGGTAC
GTGAGGATGCCCATTTGTTGTTTGGATTTGCCCAAAAAGCCGACCGCACTTTATTCCGCGAACTGATAAAAACCAATGGT
GTCGGGCCCAAATTGGCGCTGGCGATTTTGTCTGCCATGTCGGTAGATGAATTTGCTTATGCTATTGAACGCGAGGAACT
CTCCCGTTTGGTAAAAATTCCCGGTATCGGCAAGAAAACCGCCGAACGGTTATTGGTGGAGTTAAAAGGCAAATTTAAAG
AAGTAAAAACAAACGACTTCTTCGTGCAGGCGGATCATTTACCTCGTTTTAGTACGGAAATATCGGCGACGGTTGAACCG
TCCAACGAAGCGGTAGCGGCGCTCGTGGCATTAGGTTATAAACCGTTAGACGCGGAAAAAATGGTGAAGAAAGTTTCCAA
ACCTGAACTTTCCAGCGAACAGATCATTCGTGAAGCTCTGAAAGCGGCATTATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

RuvA, C-terminal domain (RuvA_C)

(161-202)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142G244

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

35.407

100

0.363