Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RC16_RS03340 Genome accession   NZ_CP010468
Coordinates   625444..626217 (+) Length   257 a.a.
NCBI ID   WP_002932002.1    Uniprot ID   A0A5Z1E176
Organism   Campylobacter jejuni strain CJ677CC064     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 620444..631217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC16_RS03325 (RC16_03325) - 621293..623227 (-) 1935 WP_002931984.1 ribonuclease R family protein -
  RC16_RS03330 (RC16_03330) ilvC 623346..624368 (+) 1023 WP_002931987.1 ketol-acid reductoisomerase -
  RC16_RS03335 (RC16_03335) - 624372..625454 (+) 1083 WP_002931999.1 divergent polysaccharide deacetylase family protein -
  RC16_RS03340 (RC16_03340) dprA 625444..626217 (+) 774 WP_002932002.1 DNA-processing protein DprA Machinery gene
  RC16_RS03345 (RC16_03345) ruvX 626214..626597 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX -
  RC16_RS03350 (RC16_03350) - 626626..627465 (+) 840 WP_072225841.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  RC16_RS03355 (RC16_03355) msrA 627641..628138 (-) 498 WP_002876697.1 peptide-methionine (S)-S-oxide reductase MsrA -
  RC16_RS03360 (RC16_03360) ppa 628179..628697 (-) 519 WP_002855031.1 inorganic diphosphatase -
  RC16_RS03365 (RC16_03365) adk 628707..629285 (-) 579 WP_002855137.1 adenylate kinase -
  RC16_RS03370 (RC16_03370) aspS 629282..631033 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28740.54 Da        Isoelectric Point: 7.6510

>NTDB_id=137722 RC16_RS03340 WP_002932002.1 625444..626217(+) (dprA) [Campylobacter jejuni strain CJ677CC064]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SVAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTATNLLLKENKAKLICDFKEFVSEFASIDTNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLV

Nucleotide


Download         Length: 774 bp        

>NTDB_id=137722 RC16_RS03340 WP_002932002.1 625444..626217(+) (dprA) [Campylobacter jejuni strain CJ677CC064]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCTTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTGTGGCGGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTAGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGCAACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAATTGATTTGTGATTTCAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATACAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAC
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Z1E176

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.219

99.611

0.988
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment